BO34486.complete Sequence
1855 bp assembled on 2013-11-09
GenBank Submission: KX796041
> BO34486.complete
GAAGTTATCAGTCGACATGTTCGCCCGCTGCGCCCTTAGAACCGTGCAGG
GGTCATGGCCCCGATGCAGATACACCGGAATTCAGCCACTTGCCGCCGGT
TTCCACGTGAGCGCTCCGCAAATGGAGCCAAGCAAGCAGACCAAACTTGA
GCTAAAGCGTCGCCTGAAGGCCGAGCAAAAGGCCAAGGAGAAGGCTGAGA
AGGCGGCCGCTGCGCCGGCGGAAAATACTGCTGGCAAGAAGAAGAGCAGT
GCCGCCGAGGAGGAGGAGATCTCGCCGAATGAATACTTTAAGCTGCGCTC
CGCCGCCGTTCAGGAGCTGAAACGTTCACCCGCAACGGATCCCTATCCAC
ACAAGTTCCATGTGAGTAGCTCGCTGGAAGACTTCATTGCCAAGTACGAG
AACAGCCTCAAGGAGGGCGAGACCCTGGAGAATGTCAAACTGAGCGTGGC
TGGGCGCGTGCATGCCATACGCGAGTCGGGCGCCAAGCTCATTTTCTACG
ATCTGCGCGGCGAGGGCGTCAAGGTGCAGGTGATGGCCAGCGCTAAGTCC
TACAAGTCGGAGGCGGATTTCGAAATCGATACGTCCAAATTGCGACGTGG
TGATATCATCGGCGTTGTCGGACATCCCGGCAAAACCAAGAAGGGTGAAC
TGTCCGTTATGCCCAGCGAGATCAAGCTGCTATCGCCCTGTCTACACATG
CTGCCCCATCTGCATTTCGGGTTGAAGGACAAGGAGACGCGCTACCGCCA
GCGCTATCTTGATCTCATTCTCAACAACAATGTGCGAGAGAAATTCCAGA
TCCGTGCCAAGATCATCTCGTACGTGCGTCAGTTCCTGGATCGTCTGGGT
TTCCTGGAGATCGAGACGCCCATGATGAACATGATCGCCGGTGGAGCCAC
TGCCAAGCCCTTCGTGACGCATCACAATGACCTCAAGATGGATCTGTTCA
TGCGCATTGCTCCGGAGCTGTATCACAAGATGCTGGTGGTGGGTGGACTC
GATCGTGTGTACGAGATCGGACGGCAGTTCCGCAACGAGGGCATCGACCT
CACCCACAATCCTGAATTCACCACGTGCGAGTTCTACATGGCGTATGCCG
ACTACGCTGACATTATGGATATCACCGAGCAGTTGGTCTCGGGAATGGTG
AAAGCGATCCGTGGCTCCTACAAGGTCATCTATCATCCGGAGGGTCCAGA
GGGACCTGAGCAAGAACTTGACTTTACGCCGCCCTTTAAGCGCGTATCCA
TGATCAAAACGCTGGAAGAGAAGCTGCAGGTGAAGTTCCCCGCGGCCGAC
ACCTTCAATTCGCCAGAGACGAATCAGTTCCTGTCTCAGCTGTGCGCTAA
GCACCAGGTCGAGTGCCCAGCTCCGCGCACCACTGCCCGCCTGCTGGACA
AGCTCGTCGGCGAATTCATCGAGGAGTTTTGCGTGAATCCAACGTTCATC
TGTGAGCATCCGCAGATCATGTCGCCGCTGGCCAAGTACCATCGCAGTAT
TCCCGGCCTGACGGAGCGCTTCGAACTGTTTGTGGCCAAGAAGGAGATTT
GCAACGCGTATACCGAGTTGAACGATCCGGTTGTGCAGCGCGAGCGTTTC
GAGCAGCAGGCCAGCGACAAGGCGGCCGGCGATGATGAGGCCCAGCTGGT
CGACGAGAACTTCTGCACGTCCCTGGAGTACGGACTGCCGCCCACCGGTG
GTTTTGGCATGGGCATCGATCGCCTGGCCATGTTCCTCACGGACTCCAAC
AACATCAAGGAGGTTCTGCTGTTCCCCGCCATGAAACCGGAGGATGCCAA
CCGCACGGCAGCGGAAACTGCTCCCACCGCACAGCAGGCAAGCTTTCTAG
ACCAT
BO34486.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-lys-RC | 1824 | CG12141-PC | 1..1821 | 17..1837 | 9105 | 100 | Plus |
| Aats-lys-RB | 1824 | CG12141-PB | 1..1821 | 17..1837 | 9105 | 100 | Plus |
| Aats-lys-RA | 1725 | CG12141-PA | 33..1722 | 148..1837 | 8450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-lys-RC | 2160 | CG12141-RC | 226..2047 | 16..1837 | 9110 | 100 | Plus |
| Aats-lys-RB | 2223 | CG12141-RB | 289..2110 | 16..1837 | 9110 | 100 | Plus |
| Aats-lys-RA | 1969 | CG12141-RA | 167..1856 | 148..1837 | 8450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9606612..9607569 | 1767..810 | 4760 | 99.8 | Minus |
| X | 23542271 | X | 9607629..9608292 | 811..148 | 3320 | 100 | Minus |
| X | 23542271 | X | 9608422..9608553 | 147..16 | 660 | 100 | Minus |
| X | 23542271 | X | 9606476..9606555 | 1837..1758 | 400 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 14:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 7727..7764 | 1540..1577 | 118 | 78.9 | Plus |
BO34486.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-09 12:26:26 Download gff for
BO34486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-lys-RB | 295..2110 | 22..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:17:04 Download gff for
BO34486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-lys-RB | 295..2110 | 22..1839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:17:04 Download gff for
BO34486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9606474..9606553 | 1760..1839 | 97 | <- | Minus |
| X | 9606620..9607567 | 812..1759 | 100 | <- | Minus |
| X | 9607629..9608292 | 148..811 | 100 | <- | Minus |
| X | 9608422..9608547 | 22..147 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-09 12:26:26 Download gff for
BO34486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9500507..9500586 | 1760..1839 | 97 | <- | Minus |
| arm_X | 9500653..9501600 | 812..1759 | 100 | <- | Minus |
| arm_X | 9501662..9502325 | 148..811 | 100 | <- | Minus |
| arm_X | 9502455..9502580 | 22..147 | 100 | | Minus |
BO34486.pep Sequence
Translation from 16 to 1855
> BO34486.pep
MFARCALRTVQGSWPRCRYTGIQPLAAGFHVSAPQMEPSKQTKLELKRRL
KAEQKAKEKAEKAAAAPAENTAGKKKSSAAEEEEISPNEYFKLRSAAVQE
LKRSPATDPYPHKFHVSSSLEDFIAKYENSLKEGETLENVKLSVAGRVHA
IRESGAKLIFYDLRGEGVKVQVMASAKSYKSEADFEIDTSKLRRGDIIGV
VGHPGKTKKGELSVMPSEIKLLSPCLHMLPHLHFGLKDKETRYRQRYLDL
ILNNNVREKFQIRAKIISYVRQFLDRLGFLEIETPMMNMIAGGATAKPFV
THHNDLKMDLFMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPE
FTTCEFYMAYADYADIMDITEQLVSGMVKAIRGSYKVIYHPEGPEGPEQE
LDFTPPFKRVSMIKTLEEKLQVKFPAADTFNSPETNQFLSQLCAKHQVEC
PAPRTTARLLDKLVGEFIEEFCVNPTFICEHPQIMSPLAKYHRSIPGLTE
RFELFVAKKEICNAYTELNDPVVQRERFEQQASDKAAGDDEAQLVDENFC
TSLEYGLPPTGGFGMGIDRLAMFLTDSNNIKEVLLFPAMKPEDANRTAAE
TAPTAQQASFLDH
BO34486.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:44:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-lys-PC | 607 | CG12141-PC | 1..607 | 1..607 | 3150 | 100 | Plus |
| Aats-lys-PB | 607 | CG12141-PB | 1..607 | 1..607 | 3150 | 100 | Plus |
| Aats-lys-PA | 574 | CG12141-PA | 9..574 | 42..607 | 2915 | 99.6 | Plus |
| CG31739-PC | 1082 | CG31739-PC | 340..654 | 55..372 | 195 | 24.5 | Plus |
| CG31739-PB | 1082 | CG31739-PB | 340..654 | 55..372 | 195 | 24.5 | Plus |
