Clone BO34488 Report

Search the DGRC for BO34488

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:344
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG10550-RB
Protein status:BO34488.pep: Imported from assembly
Sequenced Size:1309

Clone Sequence Records

BO34488.complete Sequence

1309 bp assembled on 2013-09-16

GenBank Submission: KX795590

> BO34488.complete
GAAGTTATCAGTCGACATGTCGCCAAACAACAGCGCGGAAAAGCCAGTCA
ATCCCAACGAGCACCTGCACATACCGAAGTGGATAAATGAGGAATACTTC
CAGCCGATCATCGAGAAGGATGTGGAAAACTTTGACAAGATCATAAACCT
TGTGCCCATTGCGGCCACTGCGCCCGGCGAGAACTACACATCCATTATGA
TCCGCGTCATTGTGGATATACTGCTGAAGGATGGCAGCGAGCAGAGGGTA
TCGTACATTTTGAAGACAATGCTGGAGGCGGACAGTGGAGCGGATGTGAT
CGATGGCATGGGACTTTTTCCCAAGGAGCGAAAAATGTACGAGGTGCACA
TCCCGCAGTTCGTAAAGCTTTACAAGGAGGCTGGCCTGGAAATCGAATTG
GCGCCCAAGTGCCTCCATGTCGACGCCACTGACGAATTGATTACCATGGT
TTTCGAGGATCTGAGCCGGCAGAATTTCAAGAACTTCGATCGGCTAAAAG
GGTTCGATCTGCCGCACATGCGAGAAGTGCTCCGGAAACTGGCCGAACTG
CATGCTGCATCCGTGGTGGCCAAGGAAATAAATGGTCCCTACGATGCCAT
GTACAACATGTCCATCTACAACGAGCAGAGTCGGGACCTCTTTGAGTCTC
TGGGTAAGCAGCGAGAGGAGCAATTCCTCAAGGCCATGCGCAACTGGGAC
CTCGAGAATGCCGAAAGCTACATCGCCCGGATGTGGGACCCCTTGGAGGT
GTTCGAGGAAGCAGTGCAAGTCAACCAGGTGGACGAGGACGAGTTCAATG
TGCTGAACCACGGCGACTGTTGGTCCAACAACATCATGTTCAACTACAAG
GATAACGGCGAGATCGATAGAACCATATTGGTGGACCTGCAGGTTGGCAA
GTGGGGCAGCCCGGCTCAAGACCTTTGGTACCTGATCACAACATCGGCAT
CGCTGGATATCAAGATCAAGGAATTCGATCACTTTATTCAGATCTATCAC
CAGCGTCTGGCGGAATGCCTCAAGCTACTGAACTACTCGAAGCCCATTCC
CACACTCAGGGACCTGCACATTATGATGCTGAAGTATGGATTCTGGGGAC
CTCTGACCGCCATGGGTGTGATGGTGGCCACACTTATGCCCACGGACAAG
GACGCCAATATGAAAATGATTCTGGCCCAAGGACCCGAGGCCGATGCCAT
ACGATACAGGACCTTCATCAATCCCTACTATGCCAAAGCAATGAAGGTGC
TTTTACCGTTCTTCGATAACAAGGGACTTTTGAAGTCGAATGCAAGCTTT
CTAGACCAT

BO34488.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10550-RD 1278 CG10550-PD 1..1275 17..1291 6375 100 Plus
CG10550-RC 1278 CG10550-PC 1..1275 17..1291 6375 100 Plus
CG10550-RB 1278 CG10550-PB 1..1275 17..1291 6375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10550-RD 1460 CG10550-RD 85..1359 17..1291 6375 100 Plus
CG10550-RC 1594 CG10550-RC 219..1493 17..1291 6375 100 Plus
CG10550-RB 1464 CG10550-RB 89..1363 17..1291 6375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25306761..25307629 1098..230 4345 100 Minus
3R 32079331 3R 25307689..25307902 230..17 1070 100 Minus
3R 32079331 3R 25306508..25306702 1291..1097 975 100 Minus
Blast to na_te.dros performed on 2014-11-28 13:54:51 has no hits.

BO34488.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 12:01:37 Download gff for BO34488.complete
Subject Subject Range Query Range Percent Splice Strand
CG10550-RB 89..1363 17..1293 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:37:25 Download gff for BO34488.complete
Subject Subject Range Query Range Percent Splice Strand
CG10550-RB 89..1363 17..1293 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:37:25 Download gff for BO34488.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25306504..25306701 1098..1293 98 <- Minus
3R 25306762..25307628 231..1097 100 <- Minus
3R 25307689..25307902 17..230 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 12:01:37 Download gff for BO34488.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21132226..21132423 1098..1293 98 <- Minus
arm_3R 21132484..21133350 231..1097 100 <- Minus
arm_3R 21133411..21133624 17..230 100   Minus

BO34488.pep Sequence

Translation from 16 to 1309

> BO34488.pep
MSPNNSAEKPVNPNEHLHIPKWINEEYFQPIIEKDVENFDKIINLVPIAA
TAPGENYTSIMIRVIVDILLKDGSEQRVSYILKTMLEADSGADVIDGMGL
FPKERKMYEVHIPQFVKLYKEAGLEIELAPKCLHVDATDELITMVFEDLS
RQNFKNFDRLKGFDLPHMREVLRKLAELHAASVVAKEINGPYDAMYNMSI
YNEQSRDLFESLGKQREEQFLKAMRNWDLENAESYIARMWDPLEVFEEAV
QVNQVDEDEFNVLNHGDCWSNNIMFNYKDNGEIDRTILVDLQVGKWGSPA
QDLWYLITTSASLDIKIKEFDHFIQIYHQRLAECLKLLNYSKPIPTLRDL
HIMMLKYGFWGPLTAMGVMVATLMPTDKDANMKMILAQGPEADAIRYRTF
INPYYAKAMKVLLPFFDNKGLLKSNASFLDH

BO34488.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10550-PD 425 CG10550-PD 1..425 1..425 2233 100 Plus
CG10550-PC 425 CG10550-PC 1..425 1..425 2233 100 Plus
CG10550-PB 425 CG10550-PB 1..425 1..425 2233 100 Plus
CG31288-PA 428 CG31288-PA 8..421 11..422 928 42.5 Plus
CG31102-PB 420 CG31102-PB 2..418 3..422 885 41.6 Plus