BO34491.complete Sequence
835 bp assembled on 2013-09-16
GenBank Submission: KX798312
> BO34491.complete
GAAGTTATCAGTCGACATGAAACTGCTCGTATTCCTGGCTCTGGCCGTGG
CCGCAGCCACAGCCATTCCTACCCCAGAGCAAAAGTTGGTCCCCACCCCG
GTGAAGGATGTCAAGATCCAGGGTCGCATTACCAACGGCTACCCAGCCTA
CGAGGGCAAGGTTCCCTACATCGTGGGTCTGCTGTTCAGCGGCAATGGAA
ACTGGTGGTGCGGTGGCTCGATCATCGGAAACACCTGGGTCCTGACCGCC
GCCCACTGCACCAACGGAGCCAGTGGAGTGACCATCAACTACGGAGCCAG
TCTGCGCAACCAGCCCCAGTACACCCACTGGGTTGGAAGCGGAAACTTCG
TCCAGCACCACCACTACAACAGCGGCAACCTGCACAACGACATCTCCCTG
ATCCGTACCCCGCACGTCGACTTCTGGCACCTGGTCAACAAGGTGGAGCT
GCCCAGCTACAACGACCGCTACCAGGACTACGCCGGATGGTGGGCCGTGG
CCTCCGGATGGGGCGGCACCTACGATGGCAGCCCACTGCCCGACTGGCTC
CAGGCTGTCGATGTCCAGATCATGTCCCAGAGTGATTGCAGCCGCACTTG
GTCTCTCCACGACAACATGATTTGCATCAACACCAACGGCGGAAAGTCCA
CCTGCGGAGGTGACTCCGGTGGTCCCCTGGTGACACACGAGGGCAACCGC
CTGGTCGGAGTGACCTCCTTCGTTTCCTCCGCCGGCTGCCAGTCTGGTGC
TCCCGCTGTCTTCAGCCGTGTCACTGGATACTTGGACTGGATCCGCGACA
ACACCGGCATCTCGTACGCAAGCTTTCTAGACCAT
BO34491.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:54:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon99Fi-RA | 804 | CG18030-PA | 1..801 | 17..817 | 4005 | 100 | Plus |
| Jon99Fii-RA | 804 | CG2229-PA | 1..801 | 17..817 | 3780 | 98.1 | Plus |
| Jon99Cii-RA | 798 | CG31034-PA | 1..795 | 17..817 | 2860 | 90.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:54:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon99Fi-RA | 933 | CG18030-RA | 26..826 | 17..817 | 4005 | 100 | Plus |
| Jon99Fii-RA | 913 | CG2229-RA | 26..826 | 17..817 | 3780 | 98.1 | Plus |
| Jon99Cii-RA | 862 | CG31034-RA | 29..823 | 17..817 | 2860 | 90.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30488988..30489788 | 17..817 | 4005 | 100 | Plus |
| 3R | 32079331 | 3R | 30487103..30487903 | 817..17 | 3780 | 98.1 | Minus |
| 3R | 32079331 | 3R | 29923793..29924587 | 817..17 | 2860 | 90.8 | Minus |
| 3R | 32079331 | 3R | 29922242..29923036 | 17..817 | 2815 | 90.4 | Plus |
| 2L | 23513712 | 2L | 4952599..4953001 | 514..115 | 720 | 79.2 | Minus |
| 2L | 23513712 | 2L | 4949975..4950403 | 817..392 | 670 | 77.6 | Minus |
| 2L | 23513712 | 2L | 4954674..4955031 | 472..112 | 615 | 78.7 | Minus |
| 2R | 25286936 | 2R | 8691573..8691968 | 112..513 | 605 | 77.9 | Plus |
| 3L | 28110227 | 3L | 8392871..8393288 | 810..396 | 510 | 75.4 | Minus |
| 3L | 28110227 | 3L | 8391897..8392081 | 389..573 | 505 | 84.9 | Plus |
| 3L | 28110227 | 3L | 6052735..6052876 | 373..514 | 320 | 81.7 | Plus |
| 3L | 28110227 | 3L | 8391650..8391878 | 112..349 | 295 | 76.9 | Plus |
| 3L | 28110227 | 3L | 6053924..6054062 | 527..389 | 290 | 80.6 | Minus |
| 3R | 32079331 | 3R | 29925917..29926062 | 262..120 | 230 | 78.8 | Minus |
| 2R | 25286936 | 2R | 8692074..8692145 | 610..681 | 225 | 87.5 | Plus |
| 3L | 28110227 | 3L | 8393403..8393538 | 260..119 | 225 | 78.9 | Minus |
| 2L | 23513712 | 2L | 4954419..4954509 | 727..637 | 200 | 81.3 | Minus |
| 3L | 28110227 | 3L | 9641129..9641190 | 120..181 | 190 | 87.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:54:57 has no hits.
BO34491.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 12:01:40 Download gff for
BO34491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon99Fi-RA | 26..826 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:37:26 Download gff for
BO34491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon99Fi-RA | 26..826 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:37:26 Download gff for
BO34491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30488988..30489788 | 17..819 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 12:01:40 Download gff for
BO34491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26314710..26315510 | 17..819 | 99 | | Plus |
BO34491.pep Sequence
Translation from 16 to 835
> BO34491.pep
MKLLVFLALAVAAATAIPTPEQKLVPTPVKDVKIQGRITNGYPAYEGKVP
YIVGLLFSGNGNWWCGGSIIGNTWVLTAAHCTNGASGVTINYGASLRNQP
QYTHWVGSGNFVQHHHYNSGNLHNDISLIRTPHVDFWHLVNKVELPSYND
RYQDYAGWWAVASGWGGTYDGSPLPDWLQAVDVQIMSQSDCSRTWSLHDN
MICINTNGGKSTCGGDSGGPLVTHEGNRLVGVTSFVSSAGCQSGAPAVFS
RVTGYLDWIRDNTGISYASFLDH
BO34491.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon99Fi-PA | 267 | CG18030-PA | 1..267 | 1..267 | 1478 | 100 | Plus |
| Jon99Fii-PA | 267 | CG2229-PA | 1..267 | 1..267 | 1470 | 99.3 | Plus |
| Jon99Ciii-PB | 265 | CG31362-PB | 1..265 | 1..267 | 1381 | 92.5 | Plus |
| Jon99Ciii-PA | 265 | CG31362-PA | 1..265 | 1..267 | 1381 | 92.5 | Plus |
| Jon99Cii-PA | 265 | CG31034-PA | 1..265 | 1..267 | 1381 | 92.5 | Plus |
