BO34501.complete Sequence
1336 bp assembled on 2013-10-29
GenBank Submission: KX795340
> BO34501.complete
GAAGTTATCAGTCGACATGGGCTTTCTATCGAAGGCTGCCTACATCGTGT
GGGCCGTCCTGTTCGAGCAGGAGATCATGGGCTTTGTTCCTATTGAAGAG
CGCAGTCCGCAGGGATCGCCGGTCCTCAACTCCCGGATGCCACAGCGTGC
GCCGCCACCATTTCGCAGAGATTTCGAGGCCAAACTGCGCAGTTTCTATC
GCAAACTAGAGTCCAAGGGCTACGGACAAGGACCACACAAGCTTAAACTG
CACATTCGTCGCAGCCATTTGCTGGAGGACGCCTTCCGGCGCATCATGTC
CGCCAACAAGAAGGACCTGCAACGCGGCCGACTCGCCGTGCTCTGGGATA
CGGAGGAGGGCCTGGACTATGGCGGACCATCACGCGAGTTCTTCTTCCTA
CTTTCGCGCGAACTGTTTAATCCGTACTACGGACTGTTCGAGTACTCAGC
CAACGATACGTACACCGTGCAGGTGTCACCATTGTCGGCGTTCGTGGATA
ATTGCCACGATTGGTTCCGCTTTAGTGGACGAGTTTTGGGATTGGCACTG
GTACATCAGTATCTACTGGACGCATTCTTTACGCGTCCCTTTTACAAGGC
GCTGCTGCGCCTGCCCGTGGCTCTCAGTGATTTGGAGTCGCTGGACAATG
AGTTCCATCAGTCGCTCCAATGGATACGCGACAATGACATCGGCACGGGC
GTGGATCTTGGCCTAACGTTCTGTGTCACAGAGGAGCTGCTTGGCAGTGT
GGTGGACAGGGAACTGAAGCCCGGTGGCAAGAATATCATCATCAACGAGA
AGAACAAAAAGGAGTACTTGGAGCGCATGATTAAGTGGCGTCTGGAGCGC
GGTGTTCAGGAGCAGACCGAGTCGCTGGTGCGCGGCTTTTACGAGGTGAT
CGACTCGCGCCTCGTTTCCGTCTTTGATGCCCGAGAGTTGGAGCTGGTTA
TTGCCGGCACTGCAGAAATAGACACAAACGATTGGCGCCTGAACACAGAG
TATCGTTCTGGTTACCATGATAACCACCAGGTGATCGTTTGGTTCTGGCA
GGTTATCGAGCGCTTTAGCAACGAGCAGCGTCTTCGTCTGCTTCAGTTCG
TGACTGGCACGTCGAGCATACCGTACGAAGGATTCTCGGCATTACGCGGA
TCGACTGGCCCGAGGCGTTTCTGCATCGAGAAGTGGGGCAAGCCAAATGC
ACTGCCCCGTGCCCACACATGCTTCAATCGGCTGGATTTGCCGCCGTATC
CAACACCCGAACTGCTGTACGAGAAGCTGCTGCTGGCCGTCGAGGAGACC
AACACGTTCGGCATTGAGGCAAGCTTTCTAGACCAT
BO34501.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42797-RF | 1305 | CG42797-PF | 1..1302 | 17..1318 | 6510 | 100 | Plus |
| CG42797-RE | 4272 | CG42797-PE | 3009..4269 | 58..1318 | 6305 | 100 | Plus |
| CG42797-RC | 1311 | CG42797-PC | 48..1308 | 58..1318 | 6305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:12:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42797-RF | 2596 | CG42797-RF | 518..1819 | 17..1318 | 6510 | 100 | Plus |
| CG42797-RE | 6200 | CG42797-RE | 3361..4621 | 58..1318 | 6305 | 100 | Plus |
| CG42797-RC | 1954 | CG42797-RC | 192..1452 | 58..1318 | 6305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9620593..9621664 | 247..1318 | 5360 | 100 | Plus |
| X | 23542271 | X | 9620343..9620531 | 58..246 | 945 | 100 | Plus |
| X | 23542271 | X | 9616575..9616615 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:12:49 has no hits.
BO34501.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:32 Download gff for
BO34501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42797-RF | 518..1819 | 17..1320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:30 Download gff for
BO34501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42797-RF | 518..1819 | 17..1320 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:30 Download gff for
BO34501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9616575..9616615 | 17..57 | 100 | -> | Plus |
| X | 9620343..9620531 | 58..246 | 100 | -> | Plus |
| X | 9620593..9621664 | 247..1320 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:32 Download gff for
BO34501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9510608..9510648 | 17..57 | 100 | -> | Plus |
| arm_X | 9514376..9514564 | 58..246 | 100 | -> | Plus |
| arm_X | 9514626..9515697 | 247..1320 | 99 | | Plus |
BO34501.pep Sequence
Translation from 16 to 1336
> BO34501.pep
MGFLSKAAYIVWAVLFEQEIMGFVPIEERSPQGSPVLNSRMPQRAPPPFR
RDFEAKLRSFYRKLESKGYGQGPHKLKLHIRRSHLLEDAFRRIMSANKKD
LQRGRLAVLWDTEEGLDYGGPSREFFFLLSRELFNPYYGLFEYSANDTYT
VQVSPLSAFVDNCHDWFRFSGRVLGLALVHQYLLDAFFTRPFYKALLRLP
VALSDLESLDNEFHQSLQWIRDNDIGTGVDLGLTFCVTEELLGSVVDREL
KPGGKNIIINEKNKKEYLERMIKWRLERGVQEQTESLVRGFYEVIDSRLV
SVFDARELELVIAGTAEIDTNDWRLNTEYRSGYHDNHQVIVWFWQVIERF
SNEQRLRLLQFVTGTSSIPYEGFSALRGSTGPRRFCIEKWGKPNALPRAH
TCFNRLDLPPYPTPELLYEKLLLAVEETNTFGIEASFLDH
BO34501.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42797-PF | 434 | CG42797-PF | 1..434 | 1..434 | 2294 | 100 | Plus |
| CG42797-PC | 436 | CG42797-PC | 17..436 | 15..434 | 2222 | 100 | Plus |
| CG42797-PE | 1423 | CG42797-PE | 1004..1423 | 15..434 | 2222 | 100 | Plus |
| CG42797-PD | 1426 | CG42797-PD | 1007..1426 | 15..434 | 2222 | 100 | Plus |
| Nedd4-PE | 793 | CG7555-PD | 410..789 | 48..431 | 986 | 49.6 | Plus |
