BO34505.complete Sequence
1213 bp assembled on 2013-10-29
GenBank Submission: KX794494
> BO34505.complete
GAAGTTATCAGTCGACATGTCGCAGCTGCAACTGCTGCTCCTCGTCGCTT
CGGCCTCCGTGGTCCTCGCGGGATACAGCTCCTCCACCGACGAGTCGACG
GACGCCTCCAACTCCATTGGCGGCACCAAGTGCGACAAGAACCCGCTGAA
CGAACTGACCTTCCAGCTCAGCGGCAGCAGCCTCCACTGGCCCTGCGAGT
CCACCAAGAACATCTACGTCCAGTCCGGCCGCTATGTGCCCCGTAACGTG
ATCGTGACCCGGGCCCAACTGCAGCGGGACTCCGCCTTCGTGGCGCTGCC
CAGGTACAAGCAGGGCGTGCCCTTCACTCTCGGCAAGGTCAATCTAAAGA
AGGGCGAGTGCCTGACCAAGATCGCACCCTATCCCTGCTGGGCCATTCAG
GAGGAGGGCAACTGCCAGGCGCTGCAGTCCGTCGTGGACATAGCCGTCGA
TCAGAATGGACTTCTGTGGGCCTTGGACGTGGGCATTGTCAACACCCTGG
AGCAGCCCATCCGCAGATGCAGTCCCAAGATCGTGGCCATAAACACGGCC
AACCACAAGGTGGTCAAGAGCATCGACCTCAGCGACCTGGTCACCTCCGA
GAGTCGGCTGCAGTTCATCGTGGTCGACTACTCCAAGGACAACAAGCCAT
TCGTCTATGTGGCCGATGCTGGAGCACGTAGTATCCTGGTATACGACATC
ACCGGCAACAAGTCCTACCGCATCGTCCTGCCGAAGGCCACCGCCCCCAC
CAGCGATGTGCTGTACGTGGCGCTCACCTCGAAGCCGGACGGCACCTCCA
CCCTGTTCTTCAGCTACCTGAGCTCCCCCCGTCTGTACTCCATCAAGGGC
GAGTACCTGCGCGTTGGCCAGGGAGCGGGCTCCATCATCGACGTGGGCCC
CAAGCCCTATGGCAAACAGGCGGTGCTGCTGGGCGCCGACGGCGGCACCT
CGCTCTTCTTCCGCTACAAGGGCGAGAACGACATTTACCTGTGGGACTCG
GAGACCTGCTTCAAGGCCGCCAATCTGCAGGAGGTGCAGCGGGGAGGCGA
CTGCCGGCTGTCCACCCAAGTGCTCCCGGGTCACAAGCGATTCATGTGGG
CGCTGGAGAGCAACTTCCACGATTTCATCTCGGATCGCACGGGCTGCAAC
GGAGCCTCGATCGTCCTGCATCCTGTGGTGCGGGAATGTGACGATGCAAG
CTTTCTAGACCAT
BO34505.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-g-RA | 1182 | CG5717-PA | 1..1179 | 17..1195 | 5895 | 100 | Plus |
| yellow-g2-RA | 1149 | CG13804-PA | 331..456 | 377..502 | 210 | 77.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-g-RA | 1344 | CG5717-RA | 79..1257 | 17..1195 | 5895 | 100 | Plus |
| yellow-g2-RA | 1431 | CG13804-RA | 379..504 | 377..502 | 210 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:13:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2269968..2270508 | 1195..655 | 2705 | 100 | Minus |
| 3L | 28110227 | 3L | 2272250..2272691 | 458..17 | 2210 | 100 | Minus |
| 3L | 28110227 | 3L | 2270943..2271139 | 654..458 | 985 | 100 | Minus |
| 3L | 28110227 | 3L | 2276928..2277053 | 377..502 | 210 | 77.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:13:09 has no hits.
BO34505.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:37 Download gff for
BO34505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-g-RA | 79..1257 | 17..1197 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:37 Download gff for
BO34505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-g-RA | 79..1257 | 17..1197 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:37 Download gff for
BO34505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2270943..2271139 | 458..654 | 100 | <- | Minus |
| 3L | 2269965..2270508 | 655..1197 | 99 | <- | Minus |
| 3L | 2272251..2272691 | 17..457 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:37 Download gff for
BO34505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2269965..2270508 | 655..1197 | 99 | <- | Minus |
| arm_3L | 2270943..2271139 | 458..654 | 100 | <- | Minus |
| arm_3L | 2272251..2272691 | 17..457 | 100 | | Minus |
BO34505.pep Sequence
Translation from 16 to 1213
> BO34505.pep
MSQLQLLLLVASASVVLAGYSSSTDESTDASNSIGGTKCDKNPLNELTFQ
LSGSSLHWPCESTKNIYVQSGRYVPRNVIVTRAQLQRDSAFVALPRYKQG
VPFTLGKVNLKKGECLTKIAPYPCWAIQEEGNCQALQSVVDIAVDQNGLL
WALDVGIVNTLEQPIRRCSPKIVAINTANHKVVKSIDLSDLVTSESRLQF
IVVDYSKDNKPFVYVADAGARSILVYDITGNKSYRIVLPKATAPTSDVLY
VALTSKPDGTSTLFFSYLSSPRLYSIKGEYLRVGQGAGSIIDVGPKPYGK
QAVLLGADGGTSLFFRYKGENDIYLWDSETCFKAANLQEVQRGGDCRLST
QVLPGHKRFMWALESNFHDFISDRTGCNGASIVLHPVVRECDDASFLDH
BO34505.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-g-PA | 393 | CG5717-PA | 1..393 | 1..393 | 2040 | 100 | Plus |
| yellow-g2-PA | 382 | CG13804-PA | 40..369 | 50..377 | 880 | 48.8 | Plus |
| yellow-e-PA | 530 | CG9792-PA | 50..371 | 73..370 | 227 | 28.5 | Plus |
| yellow-h-PA | 463 | CG1629-PA | 76..374 | 68..337 | 223 | 25.8 | Plus |
| yellow-e2-PB | 435 | CG17044-PB | 43..244 | 47..236 | 198 | 26.2 | Plus |
