Clone BO34506 Report

Search the DGRC for BO34506

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:345
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCSN7-RA
Protein status:BO34506.pep: Imported from assembly
Sequenced Size:868

Clone Sequence Records

BO34506.complete Sequence

868 bp assembled on 2013-10-29

GenBank Submission: KX795004

> BO34506.complete
GAAGTTATCAGTCGACATGACGCAGGACATGCTGCTGGGCAACGAGGAGC
CGAGCAAGAGCAAGGAGACGTTCCTGGAGAAGTTCTGTGTCCTGGCCAAG
TCATCCACCGGCGCCGCTTTGCTGGATGTGATTCGCCAGGCCCTGGAAGC
CCCGAATGTCTTTGTTTTTGGCGAATTACTGGCGGAGCCATCCGTTTTGC
AGCTTAAAGACGGTCCGGACTCCAAGCACTTCGAGACCCTGAACCTATTC
GCATACGGCACATACAAGGAATACCGTGCACAGCCGGAAAAGTTCATCGA
GCTGACTCCTGCCATGCAGAAGAAGCTGCAGCACCTGACTATCGTCTCGC
TGGCCATTAAAGCAAAGAGCATTCCCTATGCCCTGCTGCTCAGCGAACTG
GAGATCGACAACGTCCGCCACTTGGAGGATATCATCATAGAGGCCATCTA
CGCGGACATCATCCACGGAAAGCTGTTCCAGAACACACGAATTTTGGAAG
TGGACTACGCCCAGGGCCGCGACATTCCGCCCGGATACACTGGCCAGATC
GTGGAAACCCTTCAGGCGTGGGTCAACTCCTGCGACAGCGTTTCCAATTG
CATCGAAATGCAGATTAAGTACGCGAATGCCGAGAAATCTAAAAGGCTGA
TTAACAAAGAGCGCGTGGAACAAGATCTCATCAATCTTAAGAAGGTTTTA
AAGAGCCAGACCTCGGATAGCGATGAGAGCATGCAAATCGACACCCACGG
ACCGGGAACCAGTGGCGGACTGGGTCAATCGGAGCTAAGGAAGAAGCCCT
CCAAGCTGAGGAATCCACGCAGCGCGGCAGTGGGCCTCAAGTTTAGCAAG
GCAAGCTTTCTAGACCAT

BO34506.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
CSN7-RA 837 CG2038-PA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
CSN7-RA 1186 CG2038-RA 79..912 17..850 4170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8421355..8421609 201..455 1275 100 Plus
2R 25286936 2R 8427573..8427799 450..676 1120 99.6 Plus
2R 25286936 2R 8421111..8421296 17..202 930 100 Plus
2R 25286936 2R 8427993..8428146 677..830 770 100 Plus
Blast to na_te.dros performed on 2014-11-28 14:13:13 has no hits.

BO34506.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:38 Download gff for BO34506.complete
Subject Subject Range Query Range Percent Splice Strand
CSN7-RA 79..912 17..852 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:39 Download gff for BO34506.complete
Subject Subject Range Query Range Percent Splice Strand
CSN7-RA 79..912 17..852 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:39 Download gff for BO34506.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8427579..8427799 456..676 100 -> Plus
2R 8427993..8428146 677..830 100 -> Plus
2R 8421357..8421609 203..455 100 -> Plus
2R 8421111..8421296 17..202 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:38 Download gff for BO34506.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4315084..4315304 456..676 100 -> Plus
arm_2R 4315498..4315651 677..830 100 -> Plus
arm_2R 4308862..4309114 203..455 100 -> Plus
arm_2R 4308616..4308801 17..202 100 -> Plus

BO34506.pep Sequence

Translation from 16 to 868

> BO34506.pep
MTQDMLLGNEEPSKSKETFLEKFCVLAKSSTGAALLDVIRQALEAPNVFV
FGELLAEPSVLQLKDGPDSKHFETLNLFAYGTYKEYRAQPEKFIELTPAM
QKKLQHLTIVSLAIKAKSIPYALLLSELEIDNVRHLEDIIIEAIYADIIH
GKLFQNTRILEVDYAQGRDIPPGYTGQIVETLQAWVNSCDSVSNCIEMQI
KYANAEKSKRLINKERVEQDLINLKKVLKSQTSDSDESMQIDTHGPGTSG
GLGQSELRKKPSKLRNPRSAAVGLKFSKASFLDH

BO34506.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
CSN7-PA 278 CG2038-PA 1..278 1..278 1403 100 Plus