BO34506.complete Sequence
868 bp assembled on 2013-10-29
GenBank Submission: KX795004
> BO34506.complete
GAAGTTATCAGTCGACATGACGCAGGACATGCTGCTGGGCAACGAGGAGC
CGAGCAAGAGCAAGGAGACGTTCCTGGAGAAGTTCTGTGTCCTGGCCAAG
TCATCCACCGGCGCCGCTTTGCTGGATGTGATTCGCCAGGCCCTGGAAGC
CCCGAATGTCTTTGTTTTTGGCGAATTACTGGCGGAGCCATCCGTTTTGC
AGCTTAAAGACGGTCCGGACTCCAAGCACTTCGAGACCCTGAACCTATTC
GCATACGGCACATACAAGGAATACCGTGCACAGCCGGAAAAGTTCATCGA
GCTGACTCCTGCCATGCAGAAGAAGCTGCAGCACCTGACTATCGTCTCGC
TGGCCATTAAAGCAAAGAGCATTCCCTATGCCCTGCTGCTCAGCGAACTG
GAGATCGACAACGTCCGCCACTTGGAGGATATCATCATAGAGGCCATCTA
CGCGGACATCATCCACGGAAAGCTGTTCCAGAACACACGAATTTTGGAAG
TGGACTACGCCCAGGGCCGCGACATTCCGCCCGGATACACTGGCCAGATC
GTGGAAACCCTTCAGGCGTGGGTCAACTCCTGCGACAGCGTTTCCAATTG
CATCGAAATGCAGATTAAGTACGCGAATGCCGAGAAATCTAAAAGGCTGA
TTAACAAAGAGCGCGTGGAACAAGATCTCATCAATCTTAAGAAGGTTTTA
AAGAGCCAGACCTCGGATAGCGATGAGAGCATGCAAATCGACACCCACGG
ACCGGGAACCAGTGGCGGACTGGGTCAATCGGAGCTAAGGAAGAAGCCCT
CCAAGCTGAGGAATCCACGCAGCGCGGCAGTGGGCCTCAAGTTTAGCAAG
GCAAGCTTTCTAGACCAT
BO34506.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN7-RA | 837 | CG2038-PA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:13:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN7-RA | 1186 | CG2038-RA | 79..912 | 17..850 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8421355..8421609 | 201..455 | 1275 | 100 | Plus |
2R | 25286936 | 2R | 8427573..8427799 | 450..676 | 1120 | 99.6 | Plus |
2R | 25286936 | 2R | 8421111..8421296 | 17..202 | 930 | 100 | Plus |
2R | 25286936 | 2R | 8427993..8428146 | 677..830 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:13:13 has no hits.
BO34506.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:38 Download gff for
BO34506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN7-RA | 79..912 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:39 Download gff for
BO34506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN7-RA | 79..912 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:39 Download gff for
BO34506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8427579..8427799 | 456..676 | 100 | -> | Plus |
2R | 8427993..8428146 | 677..830 | 100 | -> | Plus |
2R | 8421357..8421609 | 203..455 | 100 | -> | Plus |
2R | 8421111..8421296 | 17..202 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:38 Download gff for
BO34506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4315084..4315304 | 456..676 | 100 | -> | Plus |
arm_2R | 4315498..4315651 | 677..830 | 100 | -> | Plus |
arm_2R | 4308862..4309114 | 203..455 | 100 | -> | Plus |
arm_2R | 4308616..4308801 | 17..202 | 100 | -> | Plus |
BO34506.pep Sequence
Translation from 16 to 868
> BO34506.pep
MTQDMLLGNEEPSKSKETFLEKFCVLAKSSTGAALLDVIRQALEAPNVFV
FGELLAEPSVLQLKDGPDSKHFETLNLFAYGTYKEYRAQPEKFIELTPAM
QKKLQHLTIVSLAIKAKSIPYALLLSELEIDNVRHLEDIIIEAIYADIIH
GKLFQNTRILEVDYAQGRDIPPGYTGQIVETLQAWVNSCDSVSNCIEMQI
KYANAEKSKRLINKERVEQDLINLKKVLKSQTSDSDESMQIDTHGPGTSG
GLGQSELRKKPSKLRNPRSAAVGLKFSKASFLDH
BO34506.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN7-PA | 278 | CG2038-PA | 1..278 | 1..278 | 1403 | 100 | Plus |