Clone BO34509 Report

Search the DGRC for BO34509

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:345
Well:9
Vector:pDNR-Dual
Associated Gene/Transcriptc-cup-RA
Protein status:BO34509.pep: Imported from assembly
Sequenced Size:637

Clone Sequence Records

BO34509.complete Sequence

637 bp assembled on 2013-10-29

GenBank Submission: KX797095

> BO34509.complete
GAAGTTATCAGTCGACATGCCGATACTTGGACAAATGTTTCCTGCAAAGC
TGGGTCCCAATTTGATGACAGCCTCCAAAGTGCTAAAAAGTCCTCTTGGC
CAGGCGTTAGTCTCCTTTTTGGTTGGCTACTTTGTCACCACAAAGTTGTC
GCAATTTTATGGCAAATTCAAGAGGGACTCTGAGAAATCCGATGAGTCGA
CGCAGTACTTGGACATGTACCCCAGGAAAGAGAGTCAGCCAAAGGACACC
AAAGGACACGATATCGTTCTGCTCACTCTGGAGGAGCTAACTGCCTTCGA
TGGCTCGAGTCCCAGTCTACCCATTTACACCGCTCTGAATGGCCTCATAT
ACGATCTGAGTCCGGGCCGAGAAAAGTTCAGCAGTCACGGTCCGTACTCC
CTATTGGCCGGTTGCAATGCCAACAAGGTCCTGAACATTGCCTGCAGTTC
CATGGGCGTCTGCGCTGCGAACGTAATAAGTCGCTGGGAGCAGAGCCTAA
GAGCCGAATTTAAAGTCGTAGGATATTTAGTCGATGCTGATATAGATATT
ATTAGCGGTAGTCCAGTCAAACATACAAATTCGGCCATAGGGGAGCAAAT
GGAGAAGAGTGATATCGTTGCAAGCTTTCTAGACCAT

BO34509.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
c-cup-RA 606 CG15623-PA 1..603 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
c-cup-RA 882 CG15623-RA 112..714 17..619 3015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1831795..1832366 619..48 2860 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:13:22 has no hits.

BO34509.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:41 Download gff for BO34509.complete
Subject Subject Range Query Range Percent Splice Strand
c-cup-RA 112..714 17..621 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:44 Download gff for BO34509.complete
Subject Subject Range Query Range Percent Splice Strand
c-cup-RA 112..714 17..621 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:44 Download gff for BO34509.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1831793..1832366 48..621 99 <- Minus
2L 1832424..1832454 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:41 Download gff for BO34509.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1831793..1832366 48..621 99 <- Minus
arm_2L 1832424..1832454 17..47 100   Minus

BO34509.pep Sequence

Translation from 16 to 637

> BO34509.pep
MPILGQMFPAKLGPNLMTASKVLKSPLGQALVSFLVGYFVTTKLSQFYGK
FKRDSEKSDESTQYLDMYPRKESQPKDTKGHDIVLLTLEELTAFDGSSPS
LPIYTALNGLIYDLSPGREKFSSHGPYSLLAGCNANKVLNIACSSMGVCA
ANVISRWEQSLRAEFKVVGYLVDADIDIISGSPVKHTNSAIGEQMEKSDI
VASFLDH

BO34509.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
c-cup-PA 201 CG15623-PA 1..201 1..201 1029 100 Plus