BO34509.complete Sequence
637 bp assembled on 2013-10-29
GenBank Submission: KX797095
> BO34509.complete
GAAGTTATCAGTCGACATGCCGATACTTGGACAAATGTTTCCTGCAAAGC
TGGGTCCCAATTTGATGACAGCCTCCAAAGTGCTAAAAAGTCCTCTTGGC
CAGGCGTTAGTCTCCTTTTTGGTTGGCTACTTTGTCACCACAAAGTTGTC
GCAATTTTATGGCAAATTCAAGAGGGACTCTGAGAAATCCGATGAGTCGA
CGCAGTACTTGGACATGTACCCCAGGAAAGAGAGTCAGCCAAAGGACACC
AAAGGACACGATATCGTTCTGCTCACTCTGGAGGAGCTAACTGCCTTCGA
TGGCTCGAGTCCCAGTCTACCCATTTACACCGCTCTGAATGGCCTCATAT
ACGATCTGAGTCCGGGCCGAGAAAAGTTCAGCAGTCACGGTCCGTACTCC
CTATTGGCCGGTTGCAATGCCAACAAGGTCCTGAACATTGCCTGCAGTTC
CATGGGCGTCTGCGCTGCGAACGTAATAAGTCGCTGGGAGCAGAGCCTAA
GAGCCGAATTTAAAGTCGTAGGATATTTAGTCGATGCTGATATAGATATT
ATTAGCGGTAGTCCAGTCAAACATACAAATTCGGCCATAGGGGAGCAAAT
GGAGAAGAGTGATATCGTTGCAAGCTTTCTAGACCAT
BO34509.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
c-cup-RA | 606 | CG15623-PA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:13:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
c-cup-RA | 882 | CG15623-RA | 112..714 | 17..619 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1831795..1832366 | 619..48 | 2860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:13:22 has no hits.
BO34509.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:41 Download gff for
BO34509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
c-cup-RA | 112..714 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:44 Download gff for
BO34509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
c-cup-RA | 112..714 | 17..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:44 Download gff for
BO34509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1831793..1832366 | 48..621 | 99 | <- | Minus |
2L | 1832424..1832454 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:41 Download gff for
BO34509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1831793..1832366 | 48..621 | 99 | <- | Minus |
arm_2L | 1832424..1832454 | 17..47 | 100 | | Minus |
BO34509.pep Sequence
Translation from 16 to 637
> BO34509.pep
MPILGQMFPAKLGPNLMTASKVLKSPLGQALVSFLVGYFVTTKLSQFYGK
FKRDSEKSDESTQYLDMYPRKESQPKDTKGHDIVLLTLEELTAFDGSSPS
LPIYTALNGLIYDLSPGREKFSSHGPYSLLAGCNANKVLNIACSSMGVCA
ANVISRWEQSLRAEFKVVGYLVDADIDIISGSPVKHTNSAIGEQMEKSDI
VASFLDH
BO34509.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
c-cup-PA | 201 | CG15623-PA | 1..201 | 1..201 | 1029 | 100 | Plus |