BO34513.complete Sequence
1168 bp assembled on 2013-10-29
GenBank Submission: KX798209
> BO34513.complete
GAAGTTATCAGTCGACATGAATTCGCAATCGGCAGTGCGTCGCTATCCAC
ACAGTTTTTCCATCGAACAAATTCTGGCCAAGCCGGAAATGCGCAGCTCC
ACTTCCTTTGAGGACTCCGTGCAGGATGAAAGCGGTCGCGGTGGCAATTG
TCTCGGTGCTTCACGGGCTTCCAGTCCGGCAACATCGAGTTGCTTGGATG
ACAACATGGACGACGGCAAAAGTGATATCGATTTGGCCTCAGATGATGGA
AACGGCCTTGGTGATGACCGCAAAAAGCGACCGCGTACCGCCTTCTCGGC
AGCTCAAATCAAAGCACTGGAAACGGAGTTCGAAAGGGGAAAGTATCTTT
CGGTGGCGAAGCGAACTGCACTGGCCAAGCAGCTGCAGCTCACAGAAACG
CAGATCAAGATCTGGTTCCAAAACCGCCGCACCAAGTGGAAGCGCAAGTA
CACCTCGGACGTGGAAACGCTGGCCTCGCACTATTACGCCCAGCTGGGTA
TCGGGGGATTGGCCAGGCCGATGGTGGTTGGTGATCGCCTTTGGCTCTTT
AGCCAAACGCCAACGGGTCCCACGCCCATTCAGTCCATTATGCTAAATGG
CAGTGGCTCCGCTGCACCCATGGCCTCAGCAACGACGGCCACCGGCTCAC
CCATGCGTCCGTACGCGACTAGCGGCGGAATGCCACCGTTGCCGGGTCCC
AGTGTGATGGAGAGTGCCCGTAATGCCATACTGGCACGTGGACAACCCTT
GAACTTCGCCCTGCCCTTTGGCGTGGCTAAGCCGCCGGCGGGTGGTGTGC
CTGCGGCCAGCTACATCCCTCGCTGCAAGCCGTATGCGACCAGCTATGTG
GACTACGCGGCGTCACTGCCAACGAACGAGAGCTATCTGCAAATGAAGTA
CGCGACGCTGCCGCCGGAAGCGGAAAGCGGCGCCTCCAATGGCCTCGCCG
AACTGGAACGCGTCTTTGGGGATGCCAATGCCAACTTTCTGCAACAACGC
AGCACGCCAGTCGCTGGAACAGCCACAGCCTACGGCCACGATGGATTAAA
TCAGGCGCAGCGGAGCCGCAGACCCACACAATCGGAGTCCGAGTGCAGCG
ACATTGACTGCGAGCATCTGGACGAGGATGAGGAGCCACCTGCTGCGGAG
GCAAGCTTTCTAGACCAT
BO34513.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:13:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lms-RC | 1137 | CG13424-PC | 1..1134 | 17..1150 | 5670 | 100 | Plus |
| lms-RB | 1137 | CG13424-PB | 1..1134 | 17..1150 | 5670 | 100 | Plus |
| NK7.1-RD | 2166 | CG8524-PD | 1277..1347 | 372..442 | 235 | 88.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lms-RC | 2030 | CG13424-RC | 80..1215 | 15..1150 | 5680 | 100 | Plus |
| lms-RB | 1551 | CG13424-RB | 80..1215 | 15..1150 | 5680 | 100 | Plus |
| NK7.1-RD | 2731 | CG8524-RD | 1758..1828 | 372..442 | 235 | 88.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20558389..20559138 | 401..1150 | 3750 | 100 | Plus |
| 2R | 25286936 | 2R | 20556956..20557196 | 15..255 | 1205 | 100 | Plus |
| 2R | 25286936 | 2R | 20558086..20558235 | 254..403 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:13:33 has no hits.
BO34513.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:48 Download gff for
BO34513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lms-RB | 82..1215 | 17..1152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:50 Download gff for
BO34513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lms-RB | 82..1215 | 17..1152 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:50 Download gff for
BO34513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20556958..20557195 | 17..254 | 100 | -> | Plus |
| 2R | 20558087..20558235 | 255..403 | 100 | -> | Plus |
| 2R | 20558392..20559138 | 404..1152 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:48 Download gff for
BO34513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16444463..16444700 | 17..254 | 100 | -> | Plus |
| arm_2R | 16445592..16445740 | 255..403 | 100 | -> | Plus |
| arm_2R | 16445897..16446643 | 404..1152 | 99 | | Plus |
BO34513.pep Sequence
Translation from 16 to 1168
> BO34513.pep
MNSQSAVRRYPHSFSIEQILAKPEMRSSTSFEDSVQDESGRGGNCLGASR
ASSPATSSCLDDNMDDGKSDIDLASDDGNGLGDDRKKRPRTAFSAAQIKA
LETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVE
TLASHYYAQLGIGGLARPMVVGDRLWLFSQTPTGPTPIQSIMLNGSGSAA
PMASATTATGSPMRPYATSGGMPPLPGPSVMESARNAILARGQPLNFALP
FGVAKPPAGGVPAASYIPRCKPYATSYVDYAASLPTNESYLQMKYATLPP
EAESGASNGLAELERVFGDANANFLQQRSTPVAGTATAYGHDGLNQAQRS
RRPTQSESECSDIDCEHLDEDEEPPAAEASFLDH
BO34513.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lms-PC | 378 | CG13424-PC | 1..378 | 1..378 | 1961 | 100 | Plus |
| lms-PB | 378 | CG13424-PB | 1..378 | 1..378 | 1961 | 100 | Plus |
| B-H2-PA | 645 | CG5488-PA | 299..642 | 21..377 | 240 | 27.6 | Plus |
| B-H2-PB | 303 | CG5488-PB | 13..300 | 61..377 | 231 | 28.1 | Plus |
| NK7.1-PD | 721 | CG8524-PD | 328..514 | 16..214 | 228 | 35 | Plus |
