BO34514.complete Sequence
1330 bp assembled on 2013-10-29
GenBank Submission: KX800137
> BO34514.complete
GAAGTTATCAGTCGACATGCTGCAGTTGCTCTGTCGGCGAAAGGTGGACG
TTGAACTGGTGAAGACCAACGATTCCCGTTGGGAGGAGTTCATACTGAAT
ATCTCACAGCCCTGCAACTCAATGGTTATTCACTGTCGTTTTGGCGCCGA
TGATTACGAATGTGCACGTTTATTTCATCCCATCGTGACCGATGAAGGTC
TGTGCTGTGTTTTTAATATGCTACATCCCAGGTTTATGTACCGGAAAAGA
GTTCCCTATTCGCATCGGAATATAAGTCTGCCAGAGGGATTCCATGCAGT
CAATTGGCATGCCGAGTTGGGCTATCGCAAGCGAGGCTTTCAGCCGGACG
GTGATAATCCTCTTTACCCTCGACGAGCCCAAGGAACAGGGGAGTCATTG
GGACTATCGCTGACCCTGGATGTCCAGGCGGATGCCTACTACTGCTCCTC
ATCCAGCAGCATTGGCTTCAAGATCGCCCTGCATAGCCCGAATGAATCGC
CGAATGTCCGGGAGACCGGAGTCCTATTGGCACCCGGAATGGAGACCAAG
TTGCGCATAGATCCGTCGAAAATTCTTACCGAGAAGCATCTACGCAATGT
GGACCGTCGGAGCAGGCGTTGTTTATTCCACAATGAGCTAAAACTTCGCT
GGTTCGCCCACTACACCCAGAGAAATTGTGTGGCCGAGTGCCTTTCCGGC
TGGCTAATCCGCCACTGCGGCTGTGTGACCTTCTATATGCCCAGATTGAA
TGCGAACGATACTATATGCCCACTGCACAAGAGGGAATGTGTGGAGCTTA
TTCGATTTAGAACCATAATAGCGATGGAATCATGTCTTGACGAGTGCCTG
CCATCGTGTTTCGATCTCAGTTTCAGCGCAATTGCCTATTCGACGAGAAT
ATCGCTGGACGGCTTTAGGGAGACACCTTCGAATGGTGGTTGGAACTTTA
CCGATGCCTATGTGGAGCGCAGCGTAGCGGTGGTGAATATGTATTTTAAG
GACCCAACATTCCGAGCAAACAAACAGACCGAATTCATAGGCTTTTCCGA
TTTTCTATCTGGCGTTGGAGGTCTTATGGGATTATTCCTCGGCTTCAGCT
TTCTATCCATTGCAGAGTGTGTGTACTTCGCCTTGATTCGTCCCTGTCGC
ACTTGCTCGGAGATTCGACAACTTAATCAGCCAAGGGTGCATCAAATGAA
CTTAAAGAGGAGTCCGACTCCTGGCAACATCAGATACATTTCAGCAGCCG
ATTGGTTTCAGGCCGAATTGGCACATCAGCAGCCCAATAACAGGCAGCAC
TTTAATCCTGCTGCAAGCTTTCTAGACCAT
BO34514.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk8-RH | 1710 | CG32792-PH | 412..1707 | 17..1312 | 6480 | 100 | Plus |
| ppk8-RG | 1299 | CG32792-PG | 1..1296 | 17..1312 | 6480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk8-RH | 1910 | CG32792-RH | 412..1707 | 17..1312 | 6480 | 100 | Plus |
| ppk8-RG | 1822 | CG32792-RG | 324..1619 | 17..1312 | 6480 | 100 | Plus |
| CG2875-RC | 1975 | CG2875-RC | 1634..1887 | 1312..1059 | 1270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3570662..3571474 | 246..1058 | 4065 | 100 | Plus |
| X | 23542271 | X | 3571544..3571797 | 1059..1312 | 1270 | 100 | Plus |
| X | 23542271 | X | 3570232..3570380 | 101..249 | 745 | 100 | Plus |
| X | 23542271 | X | 3569975..3570058 | 17..100 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:13:38 has no hits.
BO34514.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:49 Download gff for
BO34514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32792-RG | 324..1619 | 17..1314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:51 Download gff for
BO34514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppk8-RG | 324..1619 | 17..1314 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:51 Download gff for
BO34514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3569975..3570058 | 17..100 | 100 | -> | Plus |
| X | 3570232..3570380 | 101..249 | 100 | -> | Plus |
| X | 3570666..3571474 | 250..1058 | 100 | -> | Plus |
| X | 3571544..3571797 | 1059..1314 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:49 Download gff for
BO34514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3464008..3464091 | 17..100 | 100 | -> | Plus |
| arm_X | 3464265..3464413 | 101..249 | 100 | -> | Plus |
| arm_X | 3464699..3465507 | 250..1058 | 100 | -> | Plus |
| arm_X | 3465577..3465830 | 1059..1314 | 99 | | Plus |
BO34514.pep Sequence
Translation from 16 to 1330
> BO34514.pep
MLQLLCRRKVDVELVKTNDSRWEEFILNISQPCNSMVIHCRFGADDYECA
RLFHPIVTDEGLCCVFNMLHPRFMYRKRVPYSHRNISLPEGFHAVNWHAE
LGYRKRGFQPDGDNPLYPRRAQGTGESLGLSLTLDVQADAYYCSSSSSIG
FKIALHSPNESPNVRETGVLLAPGMETKLRIDPSKILTEKHLRNVDRRSR
RCLFHNELKLRWFAHYTQRNCVAECLSGWLIRHCGCVTFYMPRLNANDTI
CPLHKRECVELIRFRTIIAMESCLDECLPSCFDLSFSAIAYSTRISLDGF
RETPSNGGWNFTDAYVERSVAVVNMYFKDPTFRANKQTEFIGFSDFLSGV
GGLMGLFLGFSFLSIAECVYFALIRPCRTCSEIRQLNQPRVHQMNLKRSP
TPGNIRYISAADWFQAELAHQQPNNRQHFNPAASFLDH
BO34514.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk8-PH | 569 | CG32792-PH | 138..569 | 1..432 | 2346 | 100 | Plus |
| ppk8-PG | 432 | CG32792-PG | 1..432 | 1..432 | 2346 | 100 | Plus |
| ppk12-PA | 569 | CG10972-PA | 151..504 | 17..376 | 703 | 38.4 | Plus |
| ppk5-PB | 474 | CG33289-PB | 92..463 | 1..373 | 609 | 33.2 | Plus |
| ppk28-PA | 606 | CG4805-PA | 158..533 | 22..395 | 597 | 31.6 | Plus |
