BO34516.complete Sequence
1270 bp assembled on 2013-10-29
GenBank Submission: KX798492
> BO34516.complete
GAAGTTATCAGTCGACATGGAAACCGTGGTTGCCTTCAACAATGAGCTCT
CCGGACTCTATGACAGCCGACCGCCCATTTCCAAAGCGAAGATGGCCGCC
ATCACCAAGTCGGCGATGCGGGCCATCAAGCTGTATAAGCACGTCGTCCA
GAGTGTGGAGAAGTTCATCTTGAAGTGCAAGCCGGAGTACAAAGTACCCG
GGCTGTATGTAATCGACTCGATAGTGCGCCAGTCGCGCCACCAGTACGGT
ATGGACAAGGATCTGTTCGCGCCCCGATTCCAGCGTAATCTCACGGAGAC
CTTTGCCAACTTGTTCCGGTGCGCTCCGGAGGACAAGAGTCGCATCATCC
GGGTACTGAACCTGTGGCAGAAAAACAACGTCTTCAAGTCCGAGGTCATT
CAGCCGATCTTCGACCTGGCCGACCCAAACCACCCAATCTACCACCAGAT
GCCTCCGGTGGGTGGCAGTGGAGGACAGGGCGGCGGCGTGGGTCCAGGAC
CCAGCAGCAGCGGTGCTCTTAGCCTGGCGGACATATCGAGCGGTCCGAAC
GGTCTAAACAGCTCCGGAATGGAGATAAGCATGAACAGCTCCGGGGGCGA
CGATAAGATGGGCGGTGCCATGCCCGACTTGTCGCTGGGCCATGAGAAGT
TCGGCGGTGGCAGCAGCAGCTCCAAGCGTCACTACTCGGAGCAACACTAT
TCCAAACGACAGTCGGTGGTCTCGTGCTCGTCGAAGACCAGCAAGTCGCA
TCATCACAAACGGGAATATGTCAAGAGCTCGCACGACATTGACTACCAGG
TGCGGGAGATCATCGAGGAAGAAGATGAAGGCCTGCAGATGCTGATGGCA
GATGATCACCACTGTATGGGCGACGACTCACCGCCCACTTCTTCAAACCT
GTTAGACGAGAAGAAGATCAAGCAGCTGCTAAACAATCCGAATGTGCTGC
GGCAGCTCCATACGCTGCAGAACTTCCAAAATTTGAAGCCGCAGGAGGAG
AACCAGAAGCATCGCTATCAGGACGAGGCACTGCAGCAGCATTTCCAGAA
CGTAATGAAGGGAAATGCTGGTATGCCGCCGGGCATGGGCATGGGCATGA
ACATGAACGACAGCATGGACCTTAACAAGGATGTCGAGTTCATATCGGAG
CAACAGACCATAGAGTATGCAGCACTACGCTGTGGGTGGGCCACCTGTCT
AAGCTTGTTTACCAGGAGGAGCTGTCCGATACCTTTGGCGAATATGGCGA
TAGCAAGCTTTCTAGACCAT
BO34516.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:13:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4266-RC | 1239 | CG4266-PC | 1..1236 | 17..1252 | 6180 | 100 | Plus |
| CG4266-RB | 3921 | CG4266-PB | 1..1149 | 17..1165 | 5745 | 100 | Plus |
| CG4266-RD | 3639 | CG4266-PD | 1..618 | 17..634 | 3090 | 100 | Plus |
| CG4266-RB | 3921 | CG4266-PB | 1465..1552 | 1165..1252 | 440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4266-RC | 4346 | CG4266-RC | 197..1434 | 15..1252 | 6190 | 100 | Plus |
| CG4266-RB | 4662 | CG4266-RB | 197..1347 | 15..1165 | 5755 | 100 | Plus |
| CG4266-RD | 4380 | CG4266-RD | 197..816 | 15..634 | 3100 | 100 | Plus |
| CG4266-RB | 4662 | CG4266-RB | 1663..1750 | 1165..1252 | 440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:13:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21167596..21168185 | 634..45 | 2950 | 100 | Minus |
| 2R | 25286936 | 2R | 21167171..21167445 | 908..634 | 1375 | 100 | Minus |
| 2R | 25286936 | 2R | 21166889..21167042 | 1061..908 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 21166730..21166836 | 1165..1059 | 535 | 100 | Minus |
| 2R | 25286936 | 2R | 21164957..21165045 | 1252..1164 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:13:42 has no hits.
BO34516.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:50 Download gff for
BO34516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4266-RC | 199..1434 | 17..1254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:53 Download gff for
BO34516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4266-RC | 199..1434 | 17..1254 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:53 Download gff for
BO34516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21164955..21165043 | 1166..1254 | 97 | <- | Minus |
| 2R | 21166730..21166834 | 1061..1165 | 100 | <- | Minus |
| 2R | 21166890..21167042 | 908..1060 | 100 | <- | Minus |
| 2R | 21167172..21167444 | 635..907 | 100 | <- | Minus |
| 2R | 21167596..21168183 | 47..634 | 100 | <- | Minus |
| 2R | 21168432..21168461 | 17..46 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:50 Download gff for
BO34516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17052460..17052548 | 1166..1254 | 97 | <- | Minus |
| arm_2R | 17054235..17054339 | 1061..1165 | 100 | <- | Minus |
| arm_2R | 17054395..17054547 | 908..1060 | 100 | <- | Minus |
| arm_2R | 17054677..17054949 | 635..907 | 100 | <- | Minus |
| arm_2R | 17055101..17055688 | 47..634 | 100 | <- | Minus |
| arm_2R | 17055937..17055966 | 17..46 | 100 | | Minus |
BO34516.pep Sequence
Translation from 16 to 1270
> BO34516.pep
METVVAFNNELSGLYDSRPPISKAKMAAITKSAMRAIKLYKHVVQSVEKF
ILKCKPEYKVPGLYVIDSIVRQSRHQYGMDKDLFAPRFQRNLTETFANLF
RCAPEDKSRIIRVLNLWQKNNVFKSEVIQPIFDLADPNHPIYHQMPPVGG
SGGQGGGVGPGPSSSGALSLADISSGPNGLNSSGMEISMNSSGGDDKMGG
AMPDLSLGHEKFGGGSSSSKRHYSEQHYSKRQSVVSCSSKTSKSHHHKRE
YVKSSHDIDYQVREIIEEEDEGLQMLMADDHHCMGDDSPPTSSNLLDEKK
IKQLLNNPNVLRQLHTLQNFQNLKPQEENQKHRYQDEALQQHFQNVMKGN
AGMPPGMGMGMNMNDSMDLNKDVEFISEQQTIEYAALRCGWATCLSLFTR
RSCPIPLANMAIASFLDH
BO34516.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4266-PC | 412 | CG4266-PC | 1..412 | 1..412 | 2173 | 100 | Plus |
| CG4266-PB | 1306 | CG4266-PB | 1..390 | 1..390 | 2015 | 98.7 | Plus |
| CG4266-PD | 1212 | CG4266-PD | 1..206 | 1..206 | 1072 | 100 | Plus |
| CG4266-PA | 1215 | CG4266-PA | 1..206 | 1..206 | 1072 | 100 | Plus |
| CG4266-PA | 1215 | CG4266-PA | 194..299 | 285..390 | 465 | 86.8 | Plus |
| CG4266-PD | 1212 | CG4266-PD | 194..296 | 285..390 | 437 | 84 | Plus |
