Clone BO34517 Report

Search the DGRC for BO34517

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:345
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG17574-RG
Protein status:BO34517.pep: Imported from assembly
Sequenced Size:526

Clone Sequence Records

BO34517.complete Sequence

526 bp assembled on 2013-10-29

GenBank Submission: KX798428

> BO34517.complete
GAAGTTATCAGTCGACATGTGGGCATTCTGGGTTGGATTATCTATAGCCT
TTGCCATATTTTTCATTACTTCCTTCGTTGTTTGCATTAGACGCAGGCAG
AAAGCAGCGCGAAATGTTGGCTACACAATCAGCGAAGGCGTTGCGCCTGT
GGTGGTGACCTCCGCCACCCACACGGCTCCCGGCGGATATCCGGTCACAC
AGCTGCCTCCGCCGGGCTATCCATCGAGCAATGCCTACGTAACTGCGACC
TCGTACCCCGTACAGACCACCGGCAACGTGACTGTGCAGATGCCCATGCC
GATGAGCCACCAGAACCAGCAGCAAATGCCAATGCCTATGCCGATGCCGG
GTCAGCAAACGCATGGCGTGGCGTATCCGACGTATCCTGGCGCCGGGGCT
GCCAACATGAATCCGCCGCCGTATGACATGTCCATGGCTAATCCAGGACC
TAGTGTTATGCCCGCTGGATATGAGAAGCAAGCTCCCTACAATCCCCACT
TTGGCCAGGCAAGCTTTCTAGACCAT

BO34517.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17574-RG 495 CG17574-PG 1..492 17..508 2460 100 Plus
CG17574-RK 462 CG17574-PK 94..459 143..508 1830 100 Plus
CG17574-RI 528 CG17574-PI 160..525 143..508 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17574-RG 921 CG17574-RG 48..539 17..508 2460 100 Plus
CG17574-RK 841 CG17574-RK 94..459 143..508 1830 100 Plus
CG17574-RI 965 CG17574-RI 218..583 143..508 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12849740..12849897 508..351 790 100 Minus
2R 25286936 2R 12850099..12850229 273..143 655 100 Minus
2R 25286936 2R 12850775..12850901 143..17 635 100 Minus
2R 25286936 2R 12857433..12857559 143..17 620 99.2 Minus
2R 25286936 2R 12849961..12850039 351..273 395 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:13:46 has no hits.

BO34517.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:51 Download gff for BO34517.complete
Subject Subject Range Query Range Percent Splice Strand
CG17574-RG 48..539 17..510 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:54 Download gff for BO34517.complete
Subject Subject Range Query Range Percent Splice Strand
CG17574-RG 48..539 17..510 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:54 Download gff for BO34517.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12849961..12850038 274..351 100 <- Minus
2R 12850099..12850228 144..273 100 <- Minus
2R 12850775..12850901 17..143 100   Minus
2R 12849737..12849896 352..510 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:51 Download gff for BO34517.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8737466..8737543 274..351 100 <- Minus
arm_2R 8737604..8737733 144..273 100 <- Minus
arm_2R 8738280..8738406 17..143 100   Minus
arm_2R 8737242..8737401 352..510 98 <- Minus

BO34517.pep Sequence

Translation from 16 to 526

> BO34517.pep
MWAFWVGLSIAFAIFFITSFVVCIRRRQKAARNVGYTISEGVAPVVVTSA
THTAPGGYPVTQLPPPGYPSSNAYVTATSYPVQTTGNVTVQMPMPMSHQN
QQQMPMPMPMPGQQTHGVAYPTYPGAGAANMNPPPYDMSMANPGPSVMPA
GYEKQAPYNPHFGQASFLDH

BO34517.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17574-PG 164 CG17574-PG 1..164 1..164 896 100 Plus
CG17574-PF 162 CG17574-PF 7..162 4..164 716 82.6 Plus
CG17574-PK 153 CG17574-PK 2..153 14..164 700 85.5 Plus
CG17574-PA 156 CG17574-PA 8..156 14..164 684 81.6 Plus
CG17574-PL 157 CG17574-PL 9..157 10..164 681 81.9 Plus