BO34517.complete Sequence
526 bp assembled on 2013-10-29
GenBank Submission: KX798428
> BO34517.complete
GAAGTTATCAGTCGACATGTGGGCATTCTGGGTTGGATTATCTATAGCCT
TTGCCATATTTTTCATTACTTCCTTCGTTGTTTGCATTAGACGCAGGCAG
AAAGCAGCGCGAAATGTTGGCTACACAATCAGCGAAGGCGTTGCGCCTGT
GGTGGTGACCTCCGCCACCCACACGGCTCCCGGCGGATATCCGGTCACAC
AGCTGCCTCCGCCGGGCTATCCATCGAGCAATGCCTACGTAACTGCGACC
TCGTACCCCGTACAGACCACCGGCAACGTGACTGTGCAGATGCCCATGCC
GATGAGCCACCAGAACCAGCAGCAAATGCCAATGCCTATGCCGATGCCGG
GTCAGCAAACGCATGGCGTGGCGTATCCGACGTATCCTGGCGCCGGGGCT
GCCAACATGAATCCGCCGCCGTATGACATGTCCATGGCTAATCCAGGACC
TAGTGTTATGCCCGCTGGATATGAGAAGCAAGCTCCCTACAATCCCCACT
TTGGCCAGGCAAGCTTTCTAGACCAT
BO34517.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17574-RG | 495 | CG17574-PG | 1..492 | 17..508 | 2460 | 100 | Plus |
CG17574-RK | 462 | CG17574-PK | 94..459 | 143..508 | 1830 | 100 | Plus |
CG17574-RI | 528 | CG17574-PI | 160..525 | 143..508 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:13:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17574-RG | 921 | CG17574-RG | 48..539 | 17..508 | 2460 | 100 | Plus |
CG17574-RK | 841 | CG17574-RK | 94..459 | 143..508 | 1830 | 100 | Plus |
CG17574-RI | 965 | CG17574-RI | 218..583 | 143..508 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12849740..12849897 | 508..351 | 790 | 100 | Minus |
2R | 25286936 | 2R | 12850099..12850229 | 273..143 | 655 | 100 | Minus |
2R | 25286936 | 2R | 12850775..12850901 | 143..17 | 635 | 100 | Minus |
2R | 25286936 | 2R | 12857433..12857559 | 143..17 | 620 | 99.2 | Minus |
2R | 25286936 | 2R | 12849961..12850039 | 351..273 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:13:46 has no hits.
BO34517.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:51 Download gff for
BO34517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17574-RG | 48..539 | 17..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:54 Download gff for
BO34517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17574-RG | 48..539 | 17..510 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:54 Download gff for
BO34517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12849961..12850038 | 274..351 | 100 | <- | Minus |
2R | 12850099..12850228 | 144..273 | 100 | <- | Minus |
2R | 12850775..12850901 | 17..143 | 100 | | Minus |
2R | 12849737..12849896 | 352..510 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:51 Download gff for
BO34517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8737466..8737543 | 274..351 | 100 | <- | Minus |
arm_2R | 8737604..8737733 | 144..273 | 100 | <- | Minus |
arm_2R | 8738280..8738406 | 17..143 | 100 | | Minus |
arm_2R | 8737242..8737401 | 352..510 | 98 | <- | Minus |
BO34517.pep Sequence
Translation from 16 to 526
> BO34517.pep
MWAFWVGLSIAFAIFFITSFVVCIRRRQKAARNVGYTISEGVAPVVVTSA
THTAPGGYPVTQLPPPGYPSSNAYVTATSYPVQTTGNVTVQMPMPMSHQN
QQQMPMPMPMPGQQTHGVAYPTYPGAGAANMNPPPYDMSMANPGPSVMPA
GYEKQAPYNPHFGQASFLDH
BO34517.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17574-PG | 164 | CG17574-PG | 1..164 | 1..164 | 896 | 100 | Plus |
CG17574-PF | 162 | CG17574-PF | 7..162 | 4..164 | 716 | 82.6 | Plus |
CG17574-PK | 153 | CG17574-PK | 2..153 | 14..164 | 700 | 85.5 | Plus |
CG17574-PA | 156 | CG17574-PA | 8..156 | 14..164 | 684 | 81.6 | Plus |
CG17574-PL | 157 | CG17574-PL | 9..157 | 10..164 | 681 | 81.9 | Plus |