BO34520.complete Sequence
1054 bp assembled on 2013-10-29
GenBank Submission: KX794278
> BO34520.complete
GAAGTTATCAGTCGACATGTGCGTGATATTCTTTTGTGCGGACTCGAATC
CGCAACCGGGTGGCTACAAGCTCATCCTGGCCTCCAATCGGGACGAGTTC
TTTGCCCGCGCCACCCTATCGGCAGCCAAGTGGGCGAATGCCGATCATGT
TTACGGAGGGATCGATCTGGAGCCGGGACGCGAGGGCGGCACCTGGCTGG
CGATCGGCCACTCCGCTGGCTTCTTTAAGGTGGGCGCCCTGCTCAATCTG
ACCGGCGAGCCCAAGCCACGCGATGCAGTTGCGCACAAAAACATTTTGCA
ACCGCATAATCACAACAGCAACAGCACCGGCATTAACCTTTGCCCCAAGA
CCACCACCTCCAACAGCTACCGTCATCCGAATCCGAATCCAATTCAGAAC
CCGAATACGAATCCGAGTAGGGGGCAATCGAATAACGAACATTTCTTACT
AGGGCGCGGCATGATTGTGGCGGACTATGTTACCCGGGCGGACGAGGAGC
ACAGCATCCTGAACTACAACGAAAGGCTGCTCAAAGATTGCACCAAGTAT
TCTGCCTTCAACTTTGTGTCCATCGAAATTGGATCTGCATCCCAGCCCGC
TCGCGTGAAGCTGCTGAGCAATGTGCCGCCCACGCTGGAGGATTTCCAGA
ACGGCGAGTGCTACGGATTTGGCAACAGTCTGCCGCACTCTCCGTTCGAG
AAGGTGCGTCATGGCAAACAGGAGTTCGAGGCGATCGTTAAGGCTCATGG
GGAAGCCAGCGTGGAGACTCTGTCCGCCCAGCTGATGCAGTTGCTCCGCA
ACAAGCACAAATTCTGGCCGGACGACGAGCTAAAGACACGTGCGCCCAAC
TGGGGCGAGGGATTGAGTTCCCTAAACGTCCATATCGAAGAGCATGCCTA
TGGCAGCCGTACACACTCCGTTGTCCTGGTGGACAGCGAGAATAAGATGC
ACTTCATTGAGGAGACAATGACTGGATTGGATCCGCACGGCGAATGGAAC
AAGACCCACATTGAAAAGGATTTTCAAAACGGCGTTGCAAGCTTTCTAGA
CCAT
BO34520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango2-RD | 1023 | CG11176-PD | 1..1020 | 17..1036 | 5100 | 100 | Plus |
| Tango2-RB | 1023 | CG11176-PB | 1..1020 | 17..1036 | 5100 | 100 | Plus |
| Tango2-RC | 852 | CG11176-PC | 265..849 | 452..1036 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:14:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango2-RD | 1622 | CG11176-RD | 446..1465 | 17..1036 | 5100 | 100 | Plus |
| Tango2-RB | 1547 | CG11176-RB | 375..1394 | 17..1036 | 5100 | 100 | Plus |
| Tango2-RC | 1302 | CG11176-RC | 561..1145 | 452..1036 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13618596..13619050 | 582..1036 | 2275 | 100 | Plus |
| X | 23542271 | X | 13618101..13618402 | 281..582 | 1510 | 100 | Plus |
| X | 23542271 | X | 13617434..13617576 | 17..159 | 715 | 100 | Plus |
| X | 23542271 | X | 13617812..13617936 | 157..281 | 625 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 14:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2390 | 298..372 | 125 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6842 | 298..370 | 124 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2412 | 299..367 | 122 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2384..2451 | 298..367 | 120 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2431 | 298..365 | 117 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6823 | 298..372 | 116 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6794 | 291..370 | 114 | 61.7 | Plus |
BO34520.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:57 Download gff for
BO34520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango2-RB | 375..1394 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:59 Download gff for
BO34520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango2-RB | 375..1394 | 17..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:59 Download gff for
BO34520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13618597..13619050 | 583..1038 | 99 | | Plus |
| X | 13617434..13617575 | 17..158 | 100 | -> | Plus |
| X | 13617814..13617936 | 159..281 | 100 | -> | Plus |
| X | 13618102..13618402 | 282..582 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:57 Download gff for
BO34520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13512135..13512435 | 282..582 | 100 | -> | Plus |
| arm_X | 13511467..13511608 | 17..158 | 100 | -> | Plus |
| arm_X | 13511847..13511969 | 159..281 | 100 | -> | Plus |
| arm_X | 13512630..13513083 | 583..1038 | 99 | | Plus |
BO34520.pep Sequence
Translation from 16 to 1054
> BO34520.pep
MCVIFFCADSNPQPGGYKLILASNRDEFFARATLSAAKWANADHVYGGID
LEPGREGGTWLAIGHSAGFFKVGALLNLTGEPKPRDAVAHKNILQPHNHN
SNSTGINLCPKTTTSNSYRHPNPNPIQNPNTNPSRGQSNNEHFLLGRGMI
VADYVTRADEEHSILNYNERLLKDCTKYSAFNFVSIEIGSASQPARVKLL
SNVPPTLEDFQNGECYGFGNSLPHSPFEKVRHGKQEFEAIVKAHGEASVE
TLSAQLMQLLRNKHKFWPDDELKTRAPNWGEGLSSLNVHIEEHAYGSRTH
SVVLVDSENKMHFIEETMTGLDPHGEWNKTHIEKDFQNGVASFLDH
BO34520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango2-PD | 340 | CG11176-PD | 1..340 | 1..340 | 1837 | 100 | Plus |
| Tango2-PB | 340 | CG11176-PB | 1..340 | 1..340 | 1837 | 100 | Plus |
| Tango2-PC | 283 | CG11176-PC | 1..283 | 1..340 | 1389 | 81.2 | Plus |
| Tango2-PA | 283 | CG11176-PA | 1..283 | 1..340 | 1389 | 81.2 | Plus |
