BO34526.complete Sequence
724 bp assembled on 2013-10-29
GenBank Submission: KX797974
> BO34526.complete
GAAGTTATCAGTCGACATGCAGATGCACATGGAACTCTCCTATGGCCGCG
GCTACGATCCAATCGGGAGGCAACCACCGTCTCTTCCTCCTCCGTCGCAA
CAGCACTGGTCCAGCAATGGGTTCTCCGACGACTCCGCTTCCTGCTTCCG
TCGGGGATCCTATATTGAACTGGCCAGCGGAGCCATGCGTCGCGTGGAGG
ACATACGCACCGAGGACTTCATCCAGTCGGCGCTGCGCAGTCAACTATTT
GAGCTGCGAGAGGCGACAGTAGTGAGGATAGACTGGAGTGGATGCCCCAG
CCTGGTGACACTCACCTTCAGCTACGACACACACCACGCCAAGATGGACT
TGCAGGTGCAGCCGGGTCATCCAATGTTTGTTTACGGACAGGGCTGGGCC
TCCTGCGATCCACAGTTGTCGCTGCAGCTGTACGAGCTCAAATGCCAGCA
GCTGCAGGTGGGCGACATATGTTTGTCGCTGGTGCCAAACGAGCAGCCCG
CCGCACCATGTCCGCCTCAGCCGGCGCCGCCACCGCCGTGTCCGCCTCCT
TCTCTGCCCCCGTCCATGGAAATGCCAGTGCCGATGGGTTCTCCGCCTAC
CGGAAGCTATGGATTTCTGCCGTTTAAGCATCCGTACGAGATGTACGCCC
AAATGGCCAGTTTTGTGGCCGTGTACACCCAGCACATGATGGGAAAGCTA
AACTATGCAAGCTTTCTAGACCAT
BO34526.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atx-1-RB | 693 | CG4547-PB | 1..690 | 17..706 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atx-1-RB | 890 | CG4547-RB | 47..741 | 12..706 | 3475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6823690..6824054 | 342..706 | 1825 | 100 | Plus |
| X | 23542271 | X | 6823413..6823642 | 118..347 | 1135 | 99.6 | Plus |
| X | 23542271 | X | 6823250..6823355 | 12..117 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:28:27 has no hits.
BO34526.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:02 Download gff for
BO34526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atx-1-RB | 52..741 | 17..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:14:42 Download gff for
BO34526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atx-1-RB | 52..741 | 17..708 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:14:42 Download gff for
BO34526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6823255..6823355 | 17..117 | 100 | -> | Plus |
| X | 6823413..6823638 | 118..343 | 100 | -> | Plus |
| X | 6823692..6824054 | 344..708 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:02 Download gff for
BO34526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6717446..6717671 | 118..343 | 100 | -> | Plus |
| arm_X | 6717288..6717388 | 17..117 | 100 | -> | Plus |
| arm_X | 6717725..6718087 | 344..708 | 99 | | Plus |
BO34526.pep Sequence
Translation from 16 to 724
> BO34526.pep
MQMHMELSYGRGYDPIGRQPPSLPPPSQQHWSSNGFSDDSASCFRRGSYI
ELASGAMRRVEDIRTEDFIQSALRSQLFELREATVVRIDWSGCPSLVTLT
FSYDTHHAKMDLQVQPGHPMFVYGQGWASCDPQLSLQLYELKCQQLQVGD
ICLSLVPNEQPAAPCPPQPAPPPPCPPPSLPPSMEMPVPMGSPPTGSYGF
LPFKHPYEMYAQMASFVAVYTQHMMGKLNYASFLDH
BO34526.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atx-1-PB | 230 | CG4547-PB | 1..230 | 1..230 | 1266 | 100 | Plus |
