BO34528.complete Sequence
2500 bp assembled on 2014-03-03
GenBank Submission: KX796884
> BO34528.complete
GAAGTTATCAGTCGACATGTCAGACACTAAATCCGAAATTGAGGGCTTTA
TAGCCATTCCCACGACATCGGGCGAACAACAACAACAACAGCCGCAACAG
CAGCAAAATGAGCAACAAGTGGTCGGCACAAAGGACATTAAAGCTCCTGA
TCAGGCAAGGACAATTGTGGATCCTCCGACGCCCTCGGCTGAGTCCTGCA
ACTCCTTCGATATCTTTGAGCCACCTGCCACGCCCCTGGATTCCATTAGC
CTCAAGAGCAGTGCCAGTAGTTACCTCTACGATCGTGATATTACAGCTAA
GAAACAGAATGGAGCTGCCATACGCACAAATAGCCTGGGTTCGGGCACTA
GGACGCCACCTTTGGAAAGGAAGAGCAAACTCAGTGCCCTGGGCAGATTC
TTTAAGCCCTGGAAATGGCGACGGAAAAAGAAGAGCGAGAAGTTCGAGGC
GGCCTCCAAATCCCTGGAGCGTAAGATTTCTGTGCGTGCCAATCGTGATG
AGCTAGTGCAAAAGGGGATTCTAATGCCTGAGAGTCCCCTGGGCAATATT
CCAGAACCAGGCGAGGAGTCGTATTATAACAACAGCAATAGTGGAGCCAC
CGCGAATGGATCCCTGCTCAACTCAGCCGTCCACAATAATTCCATGAGCC
AGGCCAATAATTCCATAAATGCCACCACCGGCAATCCGCTCATCTCCGCC
GCCCAGCAGCAGCTGAACCAGGGACTTCCCAACTCGATCTCCGTGCAGCA
GTTCAACGGTCAGAACCAGAATCCACAGAATTCCATGGCCAATGGCCTAG
TGGGTGGCGGCGGCGGCGGTGGAGACGGTTCCTCGGACACGTCTTCCCTC
AGCGGCGGCGTTCCGCACTCGCAGTCGGCGCCCCAGCAACTGGGGGTGGG
GCAACCACCACCACCCCTAACACCACTGGCCCAGCACCACCAGGCGCTGG
CACAGCAGCTGCAGCAGCGATTCGCCATCAGCAACAATAACGAACCAAGA
AAAGACAAGACTGATGCACAACAACAACAACACGGAGGCAATGGCACAAT
ATCCACGCCCAACATCGAGCAGCCCACCTGCCAGGGCTCGATGCTGCCGC
CCCCCGGAGGCGGTGGCCATCACCAGGTGGACGGGAGTGGCAAGATGGAG
CGGCCCAACACGCTCGCCGGCGCCAATAAGCTGACCCGTCGCGGGGTCAA
CATCTGCTATCACAACGAGCACATGTATGGCGAAGATGGAAAAATGGTGG
GTGGTCCGCCGGGCAGCACTCCGCCCCCGTATCCGGGTGGCAAACTACCG
CCGGGCGTAATGCTCAGCGAACTGCCGGAGCCGCCGATTCCGCTGTCGGA
GATCGGACCGATCCCACCGCCCCCGATGTTCTCCACTCCGAGTCCCACGC
TCATCGCAGGACGACCGCACGGGCCAGGGGCCGTCAACGATCAGGATTAT
CAGCAGGACTACGACTACGATGATAACGATCCCGATCAGGATGAGCTTGA
CTCGGACGATGAGTACGCCCCGTATGGTGGCAACCATGTGCGCATGATGG
ACACGCAACGCGTCGAGGAAATTCCAGCCAAAGAGCCCAAACCAAATGCA
GTTCCTCTCAAGTCGGCGCTGAAGAAGAAGGGCGGTATGCAGCCCGCTTC
CGCCTCCACGCCGGTCACGCCCACCCAGGAACATGGAGCGGGAAGTGCGG
CAACGGCAGCGGCCATGGCAAACAGCAATGGCGGTATTGGCTCGATGGCG
GCAGCTGCCGCAGCTGCGGCCCAACAATCCGCCAACCAACGACCGCTGGT
CGTTCGCCAGGATGCGGCGGGCAATAACTATTCGCTCAACAGGCAGCAAA
TGTTCAACATCCAATTGCCGTGCACCGTGGAGAACAAGGAGAACGCCCGG
CCATTTGTGATACGCGAAAGCAGCAGCGATAGTGACGACAGCGATGGCCA
TATCGTCTACAGGGACGAGGACAACGACAACACCCGGCTGGCCAAACTGG
CCCGCAAGGAGTCGCTGTCCCTGAAGCTGCAGCTCCGACCGGACAAGCAG
GACCTGATCAACCGCAACATCCTGCACCAGGTCAACGACAACGAGCTCAA
GGAGTCCAAGGAGGCGATCGGAGCACGCCTCATCCGGCGGCTGTCCATGC
GACCCACGGCCGAGGAGCTGGTCGAGCGCAACATCTTGAAAACTCAATCA
CCCGCCGAGGAGAAGAAGCAGAAGGAGGAGAAGAAGTCGTATCTGTTGCG
CAAACTCAGCTTTCGGCCGACCGTCGAGGAGCTGAAGGAGAAGAAGATCA
TCCGATTCAACGACTACATCGAGGTCACGCAGGCCCACGACTACGATCGG
CGGGCGGACAAGCCGTGGACAAGACTGACGCCAAAGGACAAGGCCGCCAT
TCGCAAGGAGCTGAACGAGTTCAAGTCCTCCGAAATGGCCGTCCACGAGG
GCAGTCGGCATTTGACGAGATTCCATAGGCCAGCAAGCTTTCTAGACCAT
BO34528.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32264-RK | 2469 | CG32264-PK | 1..2466 | 17..2482 | 12330 | 100 | Plus |
CG32264-RM | 2784 | CG32264-PM | 594..2781 | 295..2482 | 10940 | 100 | Plus |
CG32264-RL | 2280 | CG32264-PL | 90..2277 | 295..2482 | 10940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32264-RK | 5535 | CG32264-RK | 501..2966 | 17..2482 | 12330 | 100 | Plus |
CG32264-RM | 3767 | CG32264-RM | 1402..3589 | 295..2482 | 10940 | 100 | Plus |
CG32264-RL | 2798 | CG32264-RL | 433..2620 | 295..2482 | 10940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:58:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3767137..3767571 | 992..558 | 2175 | 100 | Minus |
3L | 28110227 | 3L | 3722156..3722523 | 1839..1472 | 1840 | 100 | Minus |
3L | 28110227 | 3L | 3718638..3718990 | 2192..1840 | 1765 | 100 | Minus |
3L | 28110227 | 3L | 3718196..3718472 | 2469..2193 | 1385 | 100 | Minus |
3L | 28110227 | 3L | 3722856..3723105 | 1476..1227 | 1235 | 99.6 | Minus |
3L | 28110227 | 3L | 3723639..3723873 | 1226..992 | 1175 | 100 | Minus |
3L | 28110227 | 3L | 3769242..3769413 | 461..290 | 845 | 99.4 | Minus |
3L | 28110227 | 3L | 3803314..3803455 | 296..155 | 710 | 100 | Minus |
3L | 28110227 | 3L | 3805821..3805959 | 155..17 | 695 | 100 | Minus |
3L | 28110227 | 3L | 3769077..3769176 | 561..462 | 500 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 14:58:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 877..942 | 1955..1890 | 123 | 65.2 | Minus |
BO34528.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:23:27 Download gff for
BO34528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32264-RK | 501..2966 | 17..2484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:28:03 Download gff for
BO34528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32264-RK | 501..2966 | 17..2484 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:28:03 Download gff for
BO34528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3718196..3718472 | 2193..2469 | 100 | <- | Minus |
3L | 3718638..3718990 | 1840..2192 | 100 | <- | Minus |
3L | 3722156..3722522 | 1473..1839 | 100 | <- | Minus |
3L | 3722860..3723105 | 1227..1472 | 100 | <- | Minus |
3L | 3723639..3723872 | 993..1226 | 100 | <- | Minus |
3L | 3767137..3767568 | 561..992 | 100 | <- | Minus |
3L | 3769078..3769176 | 462..560 | 100 | <- | Minus |
3L | 3769242..3769406 | 297..461 | 100 | <- | Minus |
3L | 3803314..3803454 | 156..296 | 100 | <- | Minus |
3L | 3805821..3805959 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:23:27 Download gff for
BO34528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3718196..3718472 | 2193..2469 | 100 | <- | Minus |
arm_3L | 3718638..3718990 | 1840..2192 | 100 | <- | Minus |
arm_3L | 3722156..3722522 | 1473..1839 | 100 | <- | Minus |
arm_3L | 3722860..3723105 | 1227..1472 | 100 | <- | Minus |
arm_3L | 3723639..3723872 | 993..1226 | 100 | <- | Minus |
arm_3L | 3767137..3767568 | 561..992 | 100 | <- | Minus |
arm_3L | 3769078..3769176 | 462..560 | 100 | <- | Minus |
arm_3L | 3769242..3769406 | 297..461 | 100 | <- | Minus |
arm_3L | 3803314..3803454 | 156..296 | 100 | <- | Minus |
arm_3L | 3805821..3805959 | 17..155 | 100 | | Minus |
BO34528.pep Sequence
Translation from 16 to 2500
> BO34528.pep
MSDTKSEIEGFIAIPTTSGEQQQQQPQQQQNEQQVVGTKDIKAPDQARTI
VDPPTPSAESCNSFDIFEPPATPLDSISLKSSASSYLYDRDITAKKQNGA
AIRTNSLGSGTRTPPLERKSKLSALGRFFKPWKWRRKKKSEKFEAASKSL
ERKISVRANRDELVQKGILMPESPLGNIPEPGEESYYNNSNSGATANGSL
LNSAVHNNSMSQANNSINATTGNPLISAAQQQLNQGLPNSISVQQFNGQN
QNPQNSMANGLVGGGGGGGDGSSDTSSLSGGVPHSQSAPQQLGVGQPPPP
LTPLAQHHQALAQQLQQRFAISNNNEPRKDKTDAQQQQHGGNGTISTPNI
EQPTCQGSMLPPPGGGGHHQVDGSGKMERPNTLAGANKLTRRGVNICYHN
EHMYGEDGKMVGGPPGSTPPPYPGGKLPPGVMLSELPEPPIPLSEIGPIP
PPPMFSTPSPTLIAGRPHGPGAVNDQDYQQDYDYDDNDPDQDELDSDDEY
APYGGNHVRMMDTQRVEEIPAKEPKPNAVPLKSALKKKGGMQPASASTPV
TPTQEHGAGSAATAAAMANSNGGIGSMAAAAAAAAQQSANQRPLVVRQDA
AGNNYSLNRQQMFNIQLPCTVENKENARPFVIRESSSDSDDSDGHIVYRD
EDNDNTRLAKLARKESLSLKLQLRPDKQDLINRNILHQVNDNELKESKEA
IGARLIRRLSMRPTAEELVERNILKTQSPAEEKKQKEEKKSYLLRKLSFR
PTVEELKEKKIIRFNDYIEVTQAHDYDRRADKPWTRLTPKDKAAIRKELN
EFKSSEMAVHEGSRHLTRFHRPASFLDH
BO34528.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:58:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32264-PK | 822 | CG32264-PK | 1..822 | 1..822 | 4294 | 100 | Plus |
CG32264-PE | 998 | CG32264-PE | 147..998 | 20..822 | 3821 | 88.1 | Plus |
CG32264-PM | 927 | CG32264-PM | 199..927 | 94..822 | 3819 | 100 | Plus |
CG32264-PL | 759 | CG32264-PL | 31..759 | 94..822 | 3819 | 100 | Plus |
CG32264-PD | 1008 | CG32264-PD | 147..1008 | 20..822 | 3794 | 87 | Plus |