BO34530.complete Sequence
1966 bp assembled on 2014-03-03
GenBank Submission: KX796066
> BO34530.complete
GAAGTTATCAGTCGACATGCTTGCGTTGTTGGCAAGCGGATCGAGCAGAA
GCAGCAGCAACAACAAACTGGCCGAATCGGAAAACTCAGCGCAAAACTCC
AACAACATGAGTTGGGGCACCGAGCTATGGGATCAAAACGAGAATCTGGC
GATACACACAAACAGAGGCATCGATGCTCTGGACAAGTTTGCCAACTTCT
TACGCGATCGAGTGGCCATAGAAACGGAATATGCCGGCAAATTAAGGCGC
CTAGTGAAAAACTACCAGCCCAAAAAGAAGGAGGAGGAAGACAATGAATT
CACATCGGTGCAAGCGTTCCGCAATCTGCTCAAGGAGGTGGGCGATCTGG
CGGGACAGCGCGAGGTGGTGTCCGAGTCCCTGCAGCTGCAGATCATTGCG
GGAGTGACGCTTCTGTCCAAGACATTGCGCGAGGAACGCAAGAAATGCCT
TAGCGATGGTGCCACCCTGCAGCAGAACCTCACCACACAGCTCTCCTCGC
TGGACCGGGCCAAGCGGAACTACGAGAAGGCCTACCGTGACTCGGAGAAG
GCGGTGGACAGCTATAAGCGGGCAGACATGGACCTCAATCTCAGCCGGGC
CGAGGTGGAGCGCTACAAGAACGTGATGACGTCCAAGATCCAGCAGTCGG
ACGATGCGAAGAACGAGTACGCTAACCAGCTACAGAAGACGAACAATCTG
CAGCAGCAACACTACAGCATGCTGCTGCCCTCGGTCCTCAATCGGCTGCA
GGAGCTGGACGAGAAACGCACCCGTGGCTTCAGGGAGTTCATTGTGGGAG
CGGCGGATGTGGAGTCATCGGTGGCGCCAATCATAGCCCGCTGCATGGAG
GGTATCGTGAAGGCCGGCGAGTCCATCAACGAAAAGGAGGATACCTTCAA
AGTCATAGAAAGATATCAATCTGGTTTCACGCCACCAAGGGACATACCCT
TCGAGGATCTGTCCAAGTGCGATCCGGATTCCGTGCAGGACTCACACTAC
AGCAACTCGACATCGAACCACCTGACCATTAGAGGCACGATGAGTGCCAA
CAAGCTGAAGAAACGCGTGGGCATTTTTAACATATTCGGCAGCAATAAGC
AACGGCAGATAATTGAAGCCTGTATCACCATGAAGAATTCCCTGACTGCG
GATGGACAAAAGGAGGACTTCAGCGATCTGCCACCGAATCAACGAAGAAA
GAAACTGCAGGCGAAGATCGCCGAACTGACACAGAATATCGCCCAGGAAA
CAAAAGCACGGGATGGCCTGATGAAGATGAAGATCGTCTATGAGGCGAAC
TCATCGCTGGGCAATCCCATGACCGTCGAGGGACAACTGAACGAGTCGGA
ACACAAGTTGGAGAAGCTGAAAGTGGATCTAAAGAAGTACCAGGGCTTCT
TGGAGAAGGCAAGCCAAGTGCCGACGGCCACCAGTAGTCCGCAGGCGAGT
CGAAATCAATTGCAAAACGGTCACCGAACCTCTAGACATTCCAATGGCAG
TGCCGATGACCATCATGATGATGGCGACGACCAGCCCGATGATGCTGGCA
GCTTAAGCAGGTCAGATTCTGAGGATAATGTGGCGCAAATACAAAATGGG
CATAATAATAACAATAACGGCAGTTCGGCAAGTCCCGAGAGTGGCCTTGG
CACTTCGCACACATCCCTGCCAGGATCAGGACAGGGCAGCGCCAACGAAA
ACGCGATTGGCGAGGATACCTACTATGAAACGGAAGTGGAGACCCTTAAT
CCAGTGGGAAAATGTCGTGCCCTGTATCCATTTGAAGCCTCCAGCGAGGG
TAGCATACCCATGAGTGAGGGCGAGGAGCTGCAAGTGATCGAGATCGACC
AAGGAGACGGATGGACGCGGGTGCGGCGGGAGAACAACTCCAATGGCTGG
GACGAGGGCTTCGTGCCCACGAGTTACATCGAGATCACGCTCTATGCTGC
AAGCTTTCTAGACCAT
BO34530.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cip4-RH | 1935 | CG15015-PH | 1..1932 | 17..1948 | 9660 | 100 | Plus |
| Cip4-RE | 1875 | CG15015-PE | 1..1544 | 17..1560 | 7720 | 100 | Plus |
| Cip4-RI | 1872 | CG15015-PI | 1..1544 | 17..1560 | 7720 | 100 | Plus |
| Cip4-RE | 1875 | CG15015-PE | 1544..1872 | 1620..1948 | 1645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cip4-RH | 3422 | CG15015-RH | 103..2034 | 17..1948 | 9660 | 100 | Plus |
| Cip4-RE | 2504 | CG15015-RE | 103..1646 | 17..1560 | 7720 | 100 | Plus |
| Cip4-RI | 3359 | CG15015-RI | 103..1646 | 17..1560 | 7720 | 100 | Plus |
| Cip4-RE | 2504 | CG15015-RE | 1646..1974 | 1620..1948 | 1645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4327233..4327704 | 912..441 | 2360 | 100 | Minus |
| 3L | 28110227 | 3L | 4325061..4325412 | 1485..1134 | 1760 | 100 | Minus |
| 3L | 28110227 | 3L | 4326984..4327172 | 1099..911 | 945 | 100 | Minus |
| 3L | 28110227 | 3L | 4324284..4324451 | 1787..1620 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 4324060..4324222 | 1948..1786 | 815 | 100 | Minus |
| 3L | 28110227 | 3L | 4327773..4327917 | 442..298 | 725 | 100 | Minus |
| 3L | 28110227 | 3L | 4324862..4324999 | 1620..1483 | 690 | 100 | Minus |
| 3L | 28110227 | 3L | 4338066..4338183 | 247..130 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 4363026..4363127 | 131..30 | 510 | 100 | Minus |
| 3L | 28110227 | 3L | 4336269..4336321 | 297..245 | 265 | 100 | Minus |
| 3L | 28110227 | 3L | 4326209..4326246 | 1135..1098 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:58:10 has no hits.
BO34530.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:23:31 Download gff for
BO34530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cip4-RH | 103..2034 | 17..1950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:28:07 Download gff for
BO34530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cip4-RH | 103..2034 | 17..1950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:28:07 Download gff for
BO34530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4324058..4324220 | 1788..1950 | 98 | <- | Minus |
| 3L | 4324284..4324450 | 1621..1787 | 100 | <- | Minus |
| 3L | 4324862..4324996 | 1486..1620 | 100 | <- | Minus |
| 3L | 4325061..4325410 | 1136..1485 | 100 | <- | Minus |
| 3L | 4326209..4326244 | 1100..1135 | 100 | <- | Minus |
| 3L | 4326984..4327170 | 913..1099 | 100 | <- | Minus |
| 3L | 4327233..4327702 | 443..912 | 100 | <- | Minus |
| 3L | 4327773..4327917 | 298..442 | 100 | <- | Minus |
| 3L | 4336269..4336319 | 247..297 | 100 | <- | Minus |
| 3L | 4338067..4338182 | 131..246 | 100 | <- | Minus |
| 3L | 4363027..4363127 | 30..130 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:23:31 Download gff for
BO34530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4324862..4324996 | 1486..1620 | 100 | <- | Minus |
| arm_3L | 4324058..4324220 | 1788..1950 | 98 | <- | Minus |
| arm_3L | 4324284..4324450 | 1621..1787 | 100 | <- | Minus |
| arm_3L | 4325061..4325410 | 1136..1485 | 100 | <- | Minus |
| arm_3L | 4326209..4326244 | 1100..1135 | 100 | <- | Minus |
| arm_3L | 4326984..4327170 | 913..1099 | 100 | <- | Minus |
| arm_3L | 4327233..4327702 | 443..912 | 100 | <- | Minus |
| arm_3L | 4327773..4327917 | 298..442 | 100 | <- | Minus |
| arm_3L | 4336269..4336319 | 247..297 | 100 | <- | Minus |
| arm_3L | 4338067..4338182 | 131..246 | 100 | <- | Minus |
| arm_3L | 4363027..4363127 | 30..130 | 100 | <- | Minus |
BO34530.pep Sequence
Translation from 16 to 1966
> BO34530.pep
MLALLASGSSRSSSNNKLAESENSAQNSNNMSWGTELWDQNENLAIHTNR
GIDALDKFANFLRDRVAIETEYAGKLRRLVKNYQPKKKEEEDNEFTSVQA
FRNLLKEVGDLAGQREVVSESLQLQIIAGVTLLSKTLREERKKCLSDGAT
LQQNLTTQLSSLDRAKRNYEKAYRDSEKAVDSYKRADMDLNLSRAEVERY
KNVMTSKIQQSDDAKNEYANQLQKTNNLQQQHYSMLLPSVLNRLQELDEK
RTRGFREFIVGAADVESSVAPIIARCMEGIVKAGESINEKEDTFKVIERY
QSGFTPPRDIPFEDLSKCDPDSVQDSHYSNSTSNHLTIRGTMSANKLKKR
VGIFNIFGSNKQRQIIEACITMKNSLTADGQKEDFSDLPPNQRRKKLQAK
IAELTQNIAQETKARDGLMKMKIVYEANSSLGNPMTVEGQLNESEHKLEK
LKVDLKKYQGFLEKASQVPTATSSPQASRNQLQNGHRTSRHSNGSADDHH
DDGDDQPDDAGSLSRSDSEDNVAQIQNGHNNNNNGSSASPESGLGTSHTS
LPGSGQGSANENAIGEDTYYETEVETLNPVGKCRALYPFEASSEGSIPMS
EGEELQVIEIDQGDGWTRVRRENNSNGWDEGFVPTSYIEITLYAASFLDH
BO34530.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cip4-PH | 644 | CG15015-PH | 1..644 | 1..644 | 3293 | 100 | Plus |
| Cip4-PA | 631 | CG15015-PA | 1..631 | 1..644 | 3194 | 98 | Plus |
| Cip4-PB | 665 | CG15015-PB | 38..665 | 4..644 | 3181 | 98 | Plus |
| Cip4-PE | 624 | CG15015-PE | 1..624 | 1..644 | 3148 | 96.7 | Plus |
| Cip4-PI | 623 | CG15015-PI | 1..623 | 1..644 | 3147 | 96.7 | Plus |
