BO34531.complete Sequence
1360 bp assembled on 2014-07-07
GenBank Submission: KX797595
> BO34531.complete
GAAGTTATCAGTCGACATGCTACGCCGAATTGGTTTTTGTTTTTGTTTTT
CCGATAATGAGCCCACGCCTATTCAAACAATGTTCTGCGGAGCTGGCAGT
TATTGCTTCCCGCTGATGACAGCAATCGGTGGGTCAACATATGGCACGAT
GATACCCAAATCAGGCGGAGATTATGCCTATATAGGCACTGCATTTGGTC
CTCTGCCTGCGTTCCTTTATCTGTGGGTGGCCCTGCTGATCCTGGTGCCC
ACGGGCAATGCGATTACGGCTCTGACTTTTGCCATATATCTGCTGAAACC
TTTTTGGCCTTCCTGCGACGCGCCCATTGAAGCTGTTCAGCTGCTGGCGG
CTGCCATGATATGTGTGCTGACGCTTATCAATTGCTATAATGTTAAGTGG
GTTACGCGTGTGACGGACATCTTTACGGGCACCAAGGTGGTTGCCCTCCT
GGTGATCGTTGGCGCCGGAGTCTGGTGGTTGTTCGATGGAAACACAGAGC
ACTGGGATAATCCCTTCTCGGGAGGCCTTCAAGATCCTGGATATATAGCC
CTGGCCTTCTATAGCGGCCTCTTCTCGTACTCCGGCTGGAACTATTTGAA
CTTTGTAACAGAGGAGCTCAAGGATCCGTACCGAAACCTGCCCAAGGCCA
TTTGCATCTCAATGCCGGTGGTCACGGTCATCTATATGATCACGAATATT
GCATACTTTTCGGTTCTCTCGCCAGACGAGATCCTTTCGTCAGATGCAGT
GGCAGTCACGTTTGGCGACAAGATGCTGGGGTATATGTCCTGGATTATGC
CCTTCGCTGTGGCCTGCTCCACTTTTGGTTCGCTGAATGGAGCGATCTTC
GCGTCCTCGCGACTTTTCTTCGTCGGTGCAAGGAATGGTCACCTGCCGGC
CGCCATTTCGCTGATTAACGTTAATTGCCTGACACCTGTGCCCTCGCTGA
TATTCCTGGGCGTGCTCACCTTGCTGCTGCTGTTCATCGAGGACGTCTAC
GTACTAATCAACTACGTCAGCTACGTGGAGGCGTTGTTCACGCTGATCTC
GGTATCCGGACTGCTGTGGATGCGCTACAAGCAACCCAAGACGGAGCGAC
CCATCAAGGTCAACTTGGCGCTGCCCATCATCTATCTGATCGTCTGCCTG
TTCCTGGTCATCTTCTCTTGCACGCAGACGCCATATGTGGTAGGAATCGG
GACGATCATTATACTGTCTGGAATTCCGGTCTACTACCTGACCATCCACA
AACCGGTCAAATGGCTGGCGGACACTTCGCAGGCGATCAACCTGTGGTGC
TCCAAATTCTTCATCTGTATGCCCAACCAGGAGAAGTTCGACGCAAGCTT
TCTAGACCAT
BO34531.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mnd-RD | 1500 | CG3297-PD | 298..1497 | 143..1342 | 6000 | 100 | Plus |
| mnd-RA | 1500 | CG3297-PA | 298..1497 | 143..1342 | 6000 | 100 | Plus |
| mnd-RC | 1500 | CG3297-PC | 298..1497 | 143..1342 | 6000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mnd-RD | 2046 | CG3297-RD | 393..1592 | 143..1342 | 6000 | 100 | Plus |
| mnd-RA | 2491 | CG3297-RA | 838..2037 | 143..1342 | 6000 | 100 | Plus |
| mnd-RC | 2376 | CG3297-RC | 723..1922 | 143..1342 | 6000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:08:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14990146..14990742 | 363..959 | 2985 | 100 | Plus |
| 3L | 28110227 | 3L | 14990829..14991213 | 958..1342 | 1925 | 100 | Plus |
| 3L | 28110227 | 3L | 14989848..14990069 | 143..364 | 1110 | 100 | Plus |
| 3L | 28110227 | 3L | 14988305..14988416 | 33..144 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:08:36 has no hits.
BO34531.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-07 10:51:14 Download gff for
BO34531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-RE | 838..2119 | 61..1344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:32:19 Download gff for
BO34531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-RC | 723..1922 | 143..1344 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:32:19 Download gff for
BO34531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14988233..14988249 | 17..33 | 100 | -> | Plus |
| 3L | 14988306..14988415 | 34..143 | 100 | -> | Plus |
| 3L | 14989849..14990067 | 144..362 | 100 | -> | Plus |
| 3L | 14990146..14990741 | 363..958 | 100 | -> | Plus |
| 3L | 14990830..14991213 | 959..1344 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-07 10:51:14 Download gff for
BO34531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14981333..14981349 | 17..33 | 100 | -> | Plus |
| arm_3L | 14981406..14981515 | 34..143 | 100 | -> | Plus |
| arm_3L | 14982949..14983167 | 144..362 | 100 | -> | Plus |
| arm_3L | 14983246..14983841 | 363..958 | 100 | -> | Plus |
| arm_3L | 14983930..14984313 | 959..1344 | 99 | | Plus |
BO34531.pep Sequence
Translation from 16 to 1360
> BO34531.pep
MLRRIGFCFCFSDNEPTPIQTMFCGAGSYCFPLMTAIGGSTYGTMIPKSG
GDYAYIGTAFGPLPAFLYLWVALLILVPTGNAITALTFAIYLLKPFWPSC
DAPIEAVQLLAAAMICVLTLINCYNVKWVTRVTDIFTGTKVVALLVIVGA
GVWWLFDGNTEHWDNPFSGGLQDPGYIALAFYSGLFSYSGWNYLNFVTEE
LKDPYRNLPKAICISMPVVTVIYMITNIAYFSVLSPDEILSSDAVAVTFG
DKMLGYMSWIMPFAVACSTFGSLNGAIFASSRLFFVGARNGHLPAAISLI
NVNCLTPVPSLIFLGVLTLLLLFIEDVYVLINYVSYVEALFTLISVSGLL
WMRYKQPKTERPIKVNLALPIIYLIVCLFLVIFSCTQTPYVVGIGTIIIL
SGIPVYYLTIHKPVKWLADTSQAINLWCSKFFICMPNQEKFDASFLDH
BO34531.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:06:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mnd-PD | 499 | CG3297-PD | 87..499 | 33..442 | 2107 | 97.3 | Plus |
| mnd-PA | 499 | CG3297-PA | 87..499 | 33..442 | 2107 | 97.3 | Plus |
| mnd-PC | 499 | CG3297-PC | 87..499 | 33..442 | 2107 | 97.3 | Plus |
| gb-PB | 517 | CG6070-PB | 103..516 | 33..440 | 1098 | 51.3 | Plus |
| gb-PA | 517 | CG6070-PA | 103..516 | 33..440 | 1098 | 51.3 | Plus |
