Clone BO34533 Report

Search the DGRC for BO34533

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:345
Well:33
Vector:pDNR-Dual
Associated Gene/Transcriptcad-RD
Protein status:BO34533.pep: Imported from assembly
Sequenced Size:853

Clone Sequence Records

BO34533.complete Sequence

853 bp assembled on 2013-10-29

GenBank Submission: KX793974

> BO34533.complete
GAAGTTATCAGTCGACATGGTTTCGCACTACTACAACACACTGCCCTACA
CACAAAAGCACAGTGCCGCCAATTTGGCCTATGCCTCAGCGGCGGGCCAG
CCATGGAACTGGACGCCCAACTACCACCACACGCCGCCGAACCACCAGTT
CCTGGGCGATGTGGACTCCTCGCATGCCGCCCACCACGCGGCCGCTGCCC
ACCAGATGTACTACAACTCCCATCACATGTTCCACTCGGCGGCGGCGGCC
TCTGCCGGGGAGTGGCACTCACCCGCCTCGAGCACGGCGGATAACTTCGT
TCAGAATGTGCCCACGTCGGCCCACCAGCTGATGCAGCAGCACCACCATC
ATCACGCCCATGCCTCCAGCAGTTCCGCCAGTTCCGGGAGCAGCAGTAGC
GGTGGTGCACCGGGTGCGCCCCAGCTCAACGAGACCAACAGCAGCATCGG
CGTCGGAGGAGCAGGCGGTGGCGGTGGTGTTGGCGGGGCCACCGATGGAG
GACCAGGTTCCGCACCACCCAACCATCAGCAGCACATCGCCGAAGGTCTG
CCGTCGCCACCGATTACCGTTTCGGGCTCGGAAATCTCTAGCCCGGGGGC
GCCGACTTCTGCCTCGTCGCCGCATCATCACTTGGCACACCATTTGAGTG
CCGTCGCCAACAACAACAACAACAACAACAACAACAACAATAGCCCATCC
ACCCATAACAACAACAACAATAACAATTCGGTGAGCAACAACAACAGGAC
ATCGCCATCGAAGCCGCCATACTTCGACTGGATGAAGAAGCCCGCCTATC
CAGCACAACCACAACCAGTTCATGCAAATTTTCTGGCAAGCTTTCTAGAC
CAT

BO34533.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
cad-RC 1338 CG1759-PC 1..802 17..818 4010 100 Plus
cad-RB 1284 CG1759-PB 1..802 17..818 4010 100 Plus
cad-RA 1284 CG1759-PA 1..802 17..818 4010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
cad-RC 2570 CG1759-RC 378..1179 17..818 4010 100 Plus
cad-RB 2353 CG1759-RB 215..1016 17..818 4010 100 Plus
cad-RA 2516 CG1759-RA 378..1179 17..818 4010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20771108..20771909 17..818 4010 100 Plus
Blast to na_te.dros performed 2014-11-28 14:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 5095..5139 20..64 117 73.3 Plus

BO34533.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:06 Download gff for BO34533.complete
Subject Subject Range Query Range Percent Splice Strand
cad-RD 378..1196 17..837 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:14:48 Download gff for BO34533.complete
Subject Subject Range Query Range Percent Splice Strand
cad-RA 378..1182 17..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:14:48 Download gff for BO34533.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20771108..20771909 17..818 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:06 Download gff for BO34533.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20771108..20771909 17..818 100 -> Plus

BO34533.pep Sequence

Translation from 16 to 853

> BO34533.pep
MVSHYYNTLPYTQKHSAANLAYASAAGQPWNWTPNYHHTPPNHQFLGDVD
SSHAAHHAAAAHQMYYNSHHMFHSAAAASAGEWHSPASSTADNFVQNVPT
SAHQLMQQHHHHHAHASSSSASSGSSSSGGAPGAPQLNETNSSIGVGGAG
GGGGVGGATDGGPGSAPPNHQQHIAEGLPSPPITVSGSEISSPGAPTSAS
SPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSKP
PYFDWMKKPAYPAQPQPVHANFLASFLDH

BO34533.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
cad-PB 427 CG1759-PB 1..267 1..267 1480 100 Plus
cad-PA 427 CG1759-PA 1..267 1..267 1480 100 Plus
cad-PC 445 CG1759-PC 1..267 1..267 1480 100 Plus
dsx-PF 427 CG11094-PF 168..330 51..200 172 32.7 Plus
dsx-PC 427 CG11094-PC 168..330 51..200 172 32.7 Plus