BO34534.complete Sequence
832 bp assembled on 2013-10-29
GenBank Submission: KX798373
> BO34534.complete
GAAGTTATCAGTCGACATGTTGATCTGCTGTATGGAAGGGTGCGAATTCA
ATAATTCGATTTCCAATGATGAGCATGTTAGGTGCTGGTTGTGTGACGAA
TATGCTCACGCGAAGTGCGCGGGCATAACTGATAGTGTAGTGGAAATGAT
TGAAGGAAGAACTGGACTCAAATGGACCTGTGAAACCTGCAGAGTTGTCA
AATCTCAGATGGGAAGATTTATGAAGCAAACGCGTACGGAAATAACTGAA
CTCTTTAGGGAAGTTCGAGCCGTCTATGAAAAGTTGGCGAAGCTAGAATC
GCATATTACGTCTCATCCTCAAAAACCGATTTACCCTGTGGACAGTGATT
CAAGTTCTAATCCATTACACACTTTTGAAGATACTAATGATGACAAAGAA
GTTGAAGATGCAGAGTCATCTATTGTTCAACACAATTCTACGAATATGCA
AAAAGCGAAAATATGGCATCATAATGCGGCTCCCGTGGTACTACCTCTAC
ATACCAATCCGGTTATTCTTAAAGCTGTACCTCCAATGAAAGCTGTGTTC
GTATCCAGACTCGTAACCTCAACTACTGAAGATGCCCTCAAACACTACAT
AGTGGCCAAACTCTCTTATCCCAATCCCGATGACATCATCGTCAGAAAAA
TATATAATAAGCAAAGACGAAAAATTGCATCGTTTAAAGTGATGGCACCG
GATCCTATATATTATACGATTTTAAATCCTGGATTTTGGCCTAAACATAT
CATTGTGCACGAGTTTGTCAACAAAAGCCTTCTTCAAACCAATGTAGAAT
TTATAAAATATTGTGCAAGCTTTCTAGACCAT
BO34534.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:14:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43446-RA | 801 | CG43446-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
| CG43446-RB | 804 | CG43446-PB | 1..801 | 17..814 | 3925 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43446-RA | 1364 | CG43446-RA | 308..1105 | 17..814 | 3990 | 100 | Plus |
| CG43446-RB | 1367 | CG43446-RB | 308..1108 | 17..814 | 3925 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20986763..20987262 | 814..315 | 2500 | 100 | Minus |
| 3R | 32079331 | 3R | 20987332..20987629 | 314..17 | 1490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:14:10 has no hits.
BO34534.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:59 Download gff for
BO34534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43446-RA | 313..1105 | 22..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:44:03 Download gff for
BO34534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43446-RA | 313..1105 | 22..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:44:03 Download gff for
BO34534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20987332..20987624 | 22..314 | 100 | | Minus |
| 3R | 20986761..20987262 | 315..816 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:59 Download gff for
BO34534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16812483..16812984 | 315..816 | 99 | <- | Minus |
| arm_3R | 16813054..16813346 | 22..314 | 100 | | Minus |
BO34534.pep Sequence
Translation from 16 to 832
> BO34534.pep
MLICCMEGCEFNNSISNDEHVRCWLCDEYAHAKCAGITDSVVEMIEGRTG
LKWTCETCRVVKSQMGRFMKQTRTEITELFREVRAVYEKLAKLESHITSH
PQKPIYPVDSDSSSNPLHTFEDTNDDKEVEDAESSIVQHNSTNMQKAKIW
HHNAAPVVLPLHTNPVILKAVPPMKAVFVSRLVTSTTEDALKHYIVAKLS
YPNPDDIIVRKIYNKQRRKIASFKVMAPDPIYYTILNPGFWPKHIIVHEF
VNKSLLQTNVEFIKYCASFLDH
BO34534.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43446-PA | 266 | CG43446-PA | 1..266 | 1..266 | 1424 | 100 | Plus |
| CG43446-PB | 267 | CG43446-PB | 1..267 | 1..266 | 1403 | 99.3 | Plus |
