BO34538.complete Sequence
1129 bp assembled on 2013-10-29
GenBank Submission: KX795721
> BO34538.complete
GAAGTTATCAGTCGACATGTCGCAACAGCGCTCCACAGAGCAGATTGCAG
CTAGCAACAACAACACCAGCGATGTAATAGCGCTGGACGACGACGAGGAT
ACGGATGTGCAATTCGTTGCAGCTCTGCGTCCCACCGCACCAGTCATCGA
TCTTTGCGTCTCGCCCTCCACTTCTGCTGCTGCTGCTGCGGCGGCGGCAG
CTGCAGCCCACTCAGGAGGCGGAAGTGGCGAGGATCCGGCGGTTGGATCC
GCATCTGGAGCTGCTGCTTCGGATACCGATTCACTTGCTTCTTCGCCTGA
CGAAGGAGCGTTAGCCACCGGTGTGGATGCAGCGGCAGCCGTTTCTGGCG
AAGATTCCCCCTCTGCAGCGGCCGCTGCCTTGGAGTGTCCCATCTGTTTG
CAAACCTGCATCCACCCAGCTCGTCTCCCCTGTGGCCACATCTTCTGCTT
TTTGTGCGTGAAGGGTGTTGCTTATAAGAACCGCCGTTGTGCTATGTGCC
GTCGCGAGATTCCCGCCGAGTTCCTGGACCATCCCCAGCTGGTGAATGGC
ATTGAGGACATCTGCACCACTCGCGCGACCGAGGACGGCTTCCAGTGGTA
TTACGAGGGAAGAAACGGGGGCTGGTGGGCGTACGATTCTCGGACCAATG
CAGACATCGAGATCGCCTATGCTGGCTTTGAGATATTCAAGGCAGATAAC
CCTGAGCTTGCTCCTTTATTTGATCGGGACTGTCCAAACCCTATCAATCA
CTATTGTCTGTGTGACGAAAATATTATTTTCTACAATGCCGATTCAGAAA
TTGTTATATACCCAACCATTATTCGTTCATCTGGTCAGGGCGCTCCAGCC
TCTTCCGAAAACAATGGTCGGGACTCGCCAGCCCTATCATTGGACGATAT
TATGAGCTTAGACCCCGATGAGCTGAACATCATTAGGCCGCATCCATGCA
CACTGCCCATTCAGATCTGCGGGCGTATGTACATCATCGACTTTTTGCAG
AATTTACAGTATCTCCGCTTGACTCCAGAAAAGAGCCGCAATATAATGCG
CTGCAAGAGCACGGATGACGTTTCTGGCGGAATGAGAGGAGTTGCTGGAC
TGAGCCAGAACGCAAGCTTTCTAGACCAT
BO34538.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8786-RF | 1098 | CG8786-PF | 1..1095 | 17..1111 | 5475 | 100 | Plus |
| CG8786-RG | 1347 | CG8786-PG | 1..602 | 17..618 | 3010 | 100 | Plus |
| CG8786-RC | 1347 | CG8786-PC | 1..602 | 17..618 | 3010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8786-RF | 1376 | CG8786-RF | 149..1244 | 16..1111 | 5480 | 100 | Plus |
| CG8786-RG | 3862 | CG8786-RG | 149..751 | 16..618 | 3015 | 100 | Plus |
| CG8786-RC | 1667 | CG8786-RC | 149..751 | 16..618 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19640491..19640985 | 1111..617 | 2475 | 100 | Minus |
| 3L | 28110227 | 3L | 19642352..19642668 | 332..16 | 1585 | 100 | Minus |
| 3L | 28110227 | 3L | 19641064..19641220 | 618..462 | 785 | 100 | Minus |
| 3L | 28110227 | 3L | 19641893..19642026 | 464..331 | 670 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 14:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2467 | 340..175 | 112 | 53 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2864 | 268..168 | 110 | 59.4 | Minus |
BO34538.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:12 Download gff for
BO34538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8786-RF | 150..1244 | 17..1113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:14:52 Download gff for
BO34538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8786-RF | 150..1244 | 17..1113 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:14:52 Download gff for
BO34538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19640489..19640984 | 618..1113 | 99 | <- | Minus |
| 3L | 19641065..19641218 | 464..617 | 100 | <- | Minus |
| 3L | 19641894..19642024 | 333..463 | 100 | <- | Minus |
| 3L | 19642352..19642667 | 17..332 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:12 Download gff for
BO34538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19633589..19634084 | 618..1113 | 99 | <- | Minus |
| arm_3L | 19634165..19634318 | 464..617 | 100 | <- | Minus |
| arm_3L | 19634994..19635124 | 333..463 | 100 | <- | Minus |
| arm_3L | 19635452..19635767 | 17..332 | 100 | | Minus |
BO34538.pep Sequence
Translation from 16 to 1129
> BO34538.pep
MSQQRSTEQIAASNNNTSDVIALDDDEDTDVQFVAALRPTAPVIDLCVSP
STSAAAAAAAAAAAHSGGGSGEDPAVGSASGAAASDTDSLASSPDEGALA
TGVDAAAAVSGEDSPSAAAAALECPICLQTCIHPARLPCGHIFCFLCVKG
VAYKNRRCAMCRREIPAEFLDHPQLVNGIEDICTTRATEDGFQWYYEGRN
GGWWAYDSRTNADIEIAYAGFEIFKADNPELAPLFDRDCPNPINHYCLCD
ENIIFYNADSEIVIYPTIIRSSGQGAPASSENNGRDSPALSLDDIMSLDP
DELNIIRPHPCTLPIQICGRMYIIDFLQNLQYLRLTPEKSRNIMRCKSTD
DVSGGMRGVAGLSQNASFLDH
BO34538.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8786-PF | 365 | CG8786-PF | 1..365 | 1..365 | 1929 | 100 | Plus |
| CG8786-PB | 376 | CG8786-PB | 1..217 | 1..218 | 1096 | 96.8 | Plus |
| CG8786-PG | 448 | CG8786-PG | 1..217 | 1..218 | 1096 | 96.8 | Plus |
| CG8786-PC | 448 | CG8786-PC | 1..217 | 1..218 | 1096 | 96.8 | Plus |
