Clone BO34539 Report

Search the DGRC for BO34539

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:345
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG3376-RC
Protein status:BO34539.pep: Imported from assembly
Sequenced Size:2326

Clone Sequence Records

BO34539.complete Sequence

2326 bp assembled on 2014-03-03

GenBank Submission: KX794260

> BO34539.complete
GAAGTTATCAGTCGACATGAAACCCGTTTCACAAAGTCAAGCCGCATACT
CCAGTCCACACCTGGTTGAACCTGGCGTAGCGAAGTCCACGAGTCCGCAC
ATTATGACACAGCAACAGCCGCCGTGGCCAAGTCCCATTTCCAGCTCCAG
TTCCAATCCCAGGGGAAAATGCTGGCTCATCCTCGTACTTATGGCTGTGC
TCCCACTGGTGGCAGATGTTGGAGCCCTGCCCTTCCTGTTCACGCACATC
AAGCCGCAGATCAACTGGACGCAGCCGGAGATGGAGAGCTGGGTAATTGA
GGAGCAGCCGCGCAGCATCGAGCCCCACCTGGAGCCAGTGCTCCATCCGA
ATCGCACGCACCGCGCTCTGTCTTCGGACAGCACGGATGCGGAGTTCCTG
CAGAGGTTGGTCAGCATCAGGCACAACCAGACGGCCAGTTCCAGGATGCT
GTGGTACGACGTGGCCGGCGGAGATGGGCTGGTGTACCCACCGTTCGTGG
ACAAGGCCCTCAAGCTGCTGAACCTCAAGCAGGTGGCCTTTGAGATCGAA
AACAGCGTGATGTCCAAGGTGACCTGCACCGCCTGCAGAGCGGGAGCCGG
GATGCTGCAGCATCAGATCCAGTCGGGCAAGACGGATGCGGAGCTCATTC
GCATGATCACGGACTACTGCACCAATCTGAACATCCAGAGTGCCCGGGTC
TGCCAGGGCGTAGCCCAACTCTTCGGCAGCGAGCTGATATACGTGCTGAA
GAGGGTCAATCTGAGTCCTGATGAACTCTGCAGCTTTGTGATTGGCGATG
GTTGTGCGGACGTGTACAATCCCTATCACGAGTGGGAGGTCATATTCCCA
CCAGTGCCCAAGCCACCTCGCCTCCCAGATCTGCCCATTCCCATGGAGGC
GGCTCCCTTCTTCAAGGTCCTGCACATTTCCGATACCCACTACGATCCCC
ACTACGCGGAGGGATCGAATGCGGACTGCAATGAGCCGCTTTGCTGCCGA
CTGAGCAGCGGTCGTCCGGCCACGCCCAATGCAGCTGCCGGAAAGTGGGG
CGACTACCGCAAGTGCGACACCCCGAAGAGGACGGTGGACCACATGTTGT
CCCACATAGCGGAGACCCACAAGGACATCGACTACATTCTATGGACGGGC
GATCTGCCTCCGCACGACGTGTGGAACCAAACCAAGGAGGAGAACCTGGC
CATCATTAAGGACACTGTGAAACAGATGGTCGAAATGTTCCCGGGAGTCC
CCATCTTCCCTGCTCTGGGCAACCACGAAAGCGCACCGGTGAACAGCTTC
CCACCGCCGTACGTTAACCAGGTGGACATATCTATTAGTTGGCTATACGA
CGAACTGGACATCCAGTGGCGCAGGTGGCTGCCCCAAAGTGTGACCCACA
CGGTGCGGCGCGGTGCCTTCTACTCGGTGCTGGTTCGACCTGGATTCAGG
ATCATCTCGCTGAACATGAACTACTGCAACAACAAGAACTGGTGGCTACT
GCTCAACTCCACGGATCCCGCCACTGAGCTACAATGGTTCATTTACGAGC
TGCAAAGTGCGGAGTTCTCCAACGAAAAGGTGCACGTCATAGGTCACATT
CCACCAGGACACTCGGACTGCCTGAAGGTCTGGTCTCGCAACTTCTACAA
GATCATATCGCGCTATGAGAGCACAGTGACTGCTCAGTTTTATGGACACA
CGCACTACGATGAGTTTGAAATGTTCTACGATCCGCACGATCTGAACCAT
CCCAACGGCATTGCGTACATAGGTCCCTCTGTATCGCCCTATTACGATCT
GAACCCCGGCTATCGTATCTACTACGTGGATGGCGATCATGATGCCACGA
CGCGCCTGGTCATCGACCACGAGTCCTGGATAATGAACCTCAAGGAGGCC
AACCTGTATGGCTACCCCATTTGGTACAAGCTCTACACAGCCCGAGCGGC
ATATAACATGAAAGCCCTGCGTCCCAGTGATTGGAACAACCTGCTCAACG
AGCTGACCAATAATCAGGAGCTATTCGAGCTGTACTACAAATACTACTGG
AAGAACTCCCCGGCGCGACCCACCTGCGATGCGGAGTGCAAGAAGAGGCT
CATCTGCGACTGTCGGAGTGGGCGTTCCCACGATCGGAAGCACTTCTGTG
CCGAGGTCGAGTCGAAGATCGACGAGGAGTCTTCCAAGTCATGGAAGTCC
TGGTTCTACAAGGGATTGACCAATTCCGCCGAGGATCGGACTGAAGAGCC
GGCCCCCACCACCGATGGCTATGGGCCTTTCGATGTGGTGATTGTTAACG
TTGGTGGTGCAAGCTTTCTAGACCAT

BO34539.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3376-RC 2295 CG3376-PC 1..2292 17..2308 11460 100 Plus
CG3376-RA 2208 CG3376-PA 1..2205 104..2308 11025 100 Plus
CG3376-RD 2181 CG3376-PD 1..2124 104..2227 10620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3376-RC 2880 CG3376-RC 498..2789 17..2308 11460 100 Plus
CG3376-RA 2827 CG3376-RA 464..2736 36..2308 11365 100 Plus
CG3376-RD 3086 CG3376-RD 464..2655 36..2227 10960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24262163..24263483 218..1538 6605 100 Plus
2R 25286936 2R 24263803..24264097 1746..2040 1475 100 Plus
2R 25286936 2R 24263535..24263744 1536..1745 1050 100 Plus
2R 25286936 2R 24264160..24264345 2041..2226 930 100 Plus
2R 25286936 2R 24261926..24262108 36..218 915 100 Plus
2R 25286936 2R 24264586..24264667 2227..2308 410 100 Plus
Blast to na_te.dros performed on 2014-11-28 14:58:14 has no hits.

BO34539.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:23:33 Download gff for BO34539.complete
Subject Subject Range Query Range Percent Splice Strand
CG3376-RC 498..2789 17..2310 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:28:08 Download gff for BO34539.complete
Subject Subject Range Query Range Percent Splice Strand
CG3376-RC 498..2789 17..2310 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:28:08 Download gff for BO34539.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24261831..24261849 17..35 100 -> Plus
2R 24261926..24262108 36..218 100 -> Plus
2R 24262164..24263481 219..1536 100 -> Plus
2R 24263536..24263744 1537..1745 100 -> Plus
2R 24263803..24264097 1746..2040 100 -> Plus
2R 24264160..24264345 2041..2226 100 -> Plus
2R 24264586..24264667 2227..2310 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:23:33 Download gff for BO34539.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20149354..20149372 17..35 100 -> Plus
arm_2R 20149449..20149631 36..218 100 -> Plus
arm_2R 20149687..20151004 219..1536 100 -> Plus
arm_2R 20151059..20151267 1537..1745 100 -> Plus
arm_2R 20151326..20151620 1746..2040 100 -> Plus
arm_2R 20151683..20151868 2041..2226 100 -> Plus
arm_2R 20152109..20152190 2227..2310 97   Plus

BO34539.pep Sequence

Translation from 16 to 2326

> BO34539.pep
MKPVSQSQAAYSSPHLVEPGVAKSTSPHIMTQQQPPWPSPISSSSSNPRG
KCWLILVLMAVLPLVADVGALPFLFTHIKPQINWTQPEMESWVIEEQPRS
IEPHLEPVLHPNRTHRALSSDSTDAEFLQRLVSIRHNQTASSRMLWYDVA
GGDGLVYPPFVDKALKLLNLKQVAFEIENSVMSKVTCTACRAGAGMLQHQ
IQSGKTDAELIRMITDYCTNLNIQSARVCQGVAQLFGSELIYVLKRVNLS
PDELCSFVIGDGCADVYNPYHEWEVIFPPVPKPPRLPDLPIPMEAAPFFK
VLHISDTHYDPHYAEGSNADCNEPLCCRLSSGRPATPNAAAGKWGDYRKC
DTPKRTVDHMLSHIAETHKDIDYILWTGDLPPHDVWNQTKEENLAIIKDT
VKQMVEMFPGVPIFPALGNHESAPVNSFPPPYVNQVDISISWLYDELDIQ
WRRWLPQSVTHTVRRGAFYSVLVRPGFRIISLNMNYCNNKNWWLLLNSTD
PATELQWFIYELQSAEFSNEKVHVIGHIPPGHSDCLKVWSRNFYKIISRY
ESTVTAQFYGHTHYDEFEMFYDPHDLNHPNGIAYIGPSVSPYYDLNPGYR
IYYVDGDHDATTRLVIDHESWIMNLKEANLYGYPIWYKLYTARAAYNMKA
LRPSDWNNLLNELTNNQELFELYYKYYWKNSPARPTCDAECKKRLICDCR
SGRSHDRKHFCAEVESKIDEESSKSWKSWFYKGLTNSAEDRTEEPAPTTD
GYGPFDVVIVNVGGASFLDH

BO34539.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3376-PC 764 CG3376-PC 1..764 1..764 4194 100 Plus
CG3376-PA 735 CG3376-PA 1..735 30..764 4046 100 Plus
CG3376-PD 726 CG3376-PD 1..708 30..737 3901 100 Plus
CG3376-PB 708 CG3376-PB 1..708 30..737 3901 100 Plus
CG15533-PA 692 CG15533-PA 99..660 187..751 802 32.2 Plus