BO34539.complete Sequence
2326 bp assembled on 2014-03-03
GenBank Submission: KX794260
> BO34539.complete
GAAGTTATCAGTCGACATGAAACCCGTTTCACAAAGTCAAGCCGCATACT
CCAGTCCACACCTGGTTGAACCTGGCGTAGCGAAGTCCACGAGTCCGCAC
ATTATGACACAGCAACAGCCGCCGTGGCCAAGTCCCATTTCCAGCTCCAG
TTCCAATCCCAGGGGAAAATGCTGGCTCATCCTCGTACTTATGGCTGTGC
TCCCACTGGTGGCAGATGTTGGAGCCCTGCCCTTCCTGTTCACGCACATC
AAGCCGCAGATCAACTGGACGCAGCCGGAGATGGAGAGCTGGGTAATTGA
GGAGCAGCCGCGCAGCATCGAGCCCCACCTGGAGCCAGTGCTCCATCCGA
ATCGCACGCACCGCGCTCTGTCTTCGGACAGCACGGATGCGGAGTTCCTG
CAGAGGTTGGTCAGCATCAGGCACAACCAGACGGCCAGTTCCAGGATGCT
GTGGTACGACGTGGCCGGCGGAGATGGGCTGGTGTACCCACCGTTCGTGG
ACAAGGCCCTCAAGCTGCTGAACCTCAAGCAGGTGGCCTTTGAGATCGAA
AACAGCGTGATGTCCAAGGTGACCTGCACCGCCTGCAGAGCGGGAGCCGG
GATGCTGCAGCATCAGATCCAGTCGGGCAAGACGGATGCGGAGCTCATTC
GCATGATCACGGACTACTGCACCAATCTGAACATCCAGAGTGCCCGGGTC
TGCCAGGGCGTAGCCCAACTCTTCGGCAGCGAGCTGATATACGTGCTGAA
GAGGGTCAATCTGAGTCCTGATGAACTCTGCAGCTTTGTGATTGGCGATG
GTTGTGCGGACGTGTACAATCCCTATCACGAGTGGGAGGTCATATTCCCA
CCAGTGCCCAAGCCACCTCGCCTCCCAGATCTGCCCATTCCCATGGAGGC
GGCTCCCTTCTTCAAGGTCCTGCACATTTCCGATACCCACTACGATCCCC
ACTACGCGGAGGGATCGAATGCGGACTGCAATGAGCCGCTTTGCTGCCGA
CTGAGCAGCGGTCGTCCGGCCACGCCCAATGCAGCTGCCGGAAAGTGGGG
CGACTACCGCAAGTGCGACACCCCGAAGAGGACGGTGGACCACATGTTGT
CCCACATAGCGGAGACCCACAAGGACATCGACTACATTCTATGGACGGGC
GATCTGCCTCCGCACGACGTGTGGAACCAAACCAAGGAGGAGAACCTGGC
CATCATTAAGGACACTGTGAAACAGATGGTCGAAATGTTCCCGGGAGTCC
CCATCTTCCCTGCTCTGGGCAACCACGAAAGCGCACCGGTGAACAGCTTC
CCACCGCCGTACGTTAACCAGGTGGACATATCTATTAGTTGGCTATACGA
CGAACTGGACATCCAGTGGCGCAGGTGGCTGCCCCAAAGTGTGACCCACA
CGGTGCGGCGCGGTGCCTTCTACTCGGTGCTGGTTCGACCTGGATTCAGG
ATCATCTCGCTGAACATGAACTACTGCAACAACAAGAACTGGTGGCTACT
GCTCAACTCCACGGATCCCGCCACTGAGCTACAATGGTTCATTTACGAGC
TGCAAAGTGCGGAGTTCTCCAACGAAAAGGTGCACGTCATAGGTCACATT
CCACCAGGACACTCGGACTGCCTGAAGGTCTGGTCTCGCAACTTCTACAA
GATCATATCGCGCTATGAGAGCACAGTGACTGCTCAGTTTTATGGACACA
CGCACTACGATGAGTTTGAAATGTTCTACGATCCGCACGATCTGAACCAT
CCCAACGGCATTGCGTACATAGGTCCCTCTGTATCGCCCTATTACGATCT
GAACCCCGGCTATCGTATCTACTACGTGGATGGCGATCATGATGCCACGA
CGCGCCTGGTCATCGACCACGAGTCCTGGATAATGAACCTCAAGGAGGCC
AACCTGTATGGCTACCCCATTTGGTACAAGCTCTACACAGCCCGAGCGGC
ATATAACATGAAAGCCCTGCGTCCCAGTGATTGGAACAACCTGCTCAACG
AGCTGACCAATAATCAGGAGCTATTCGAGCTGTACTACAAATACTACTGG
AAGAACTCCCCGGCGCGACCCACCTGCGATGCGGAGTGCAAGAAGAGGCT
CATCTGCGACTGTCGGAGTGGGCGTTCCCACGATCGGAAGCACTTCTGTG
CCGAGGTCGAGTCGAAGATCGACGAGGAGTCTTCCAAGTCATGGAAGTCC
TGGTTCTACAAGGGATTGACCAATTCCGCCGAGGATCGGACTGAAGAGCC
GGCCCCCACCACCGATGGCTATGGGCCTTTCGATGTGGTGATTGTTAACG
TTGGTGGTGCAAGCTTTCTAGACCAT
BO34539.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3376-RC | 2295 | CG3376-PC | 1..2292 | 17..2308 | 11460 | 100 | Plus |
CG3376-RA | 2208 | CG3376-PA | 1..2205 | 104..2308 | 11025 | 100 | Plus |
CG3376-RD | 2181 | CG3376-PD | 1..2124 | 104..2227 | 10620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3376-RC | 2880 | CG3376-RC | 498..2789 | 17..2308 | 11460 | 100 | Plus |
CG3376-RA | 2827 | CG3376-RA | 464..2736 | 36..2308 | 11365 | 100 | Plus |
CG3376-RD | 3086 | CG3376-RD | 464..2655 | 36..2227 | 10960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24262163..24263483 | 218..1538 | 6605 | 100 | Plus |
2R | 25286936 | 2R | 24263803..24264097 | 1746..2040 | 1475 | 100 | Plus |
2R | 25286936 | 2R | 24263535..24263744 | 1536..1745 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 24264160..24264345 | 2041..2226 | 930 | 100 | Plus |
2R | 25286936 | 2R | 24261926..24262108 | 36..218 | 915 | 100 | Plus |
2R | 25286936 | 2R | 24264586..24264667 | 2227..2308 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:58:14 has no hits.
BO34539.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:23:33 Download gff for
BO34539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3376-RC | 498..2789 | 17..2310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:28:08 Download gff for
BO34539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3376-RC | 498..2789 | 17..2310 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:28:08 Download gff for
BO34539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24261831..24261849 | 17..35 | 100 | -> | Plus |
2R | 24261926..24262108 | 36..218 | 100 | -> | Plus |
2R | 24262164..24263481 | 219..1536 | 100 | -> | Plus |
2R | 24263536..24263744 | 1537..1745 | 100 | -> | Plus |
2R | 24263803..24264097 | 1746..2040 | 100 | -> | Plus |
2R | 24264160..24264345 | 2041..2226 | 100 | -> | Plus |
2R | 24264586..24264667 | 2227..2310 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:23:33 Download gff for
BO34539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20149354..20149372 | 17..35 | 100 | -> | Plus |
arm_2R | 20149449..20149631 | 36..218 | 100 | -> | Plus |
arm_2R | 20149687..20151004 | 219..1536 | 100 | -> | Plus |
arm_2R | 20151059..20151267 | 1537..1745 | 100 | -> | Plus |
arm_2R | 20151326..20151620 | 1746..2040 | 100 | -> | Plus |
arm_2R | 20151683..20151868 | 2041..2226 | 100 | -> | Plus |
arm_2R | 20152109..20152190 | 2227..2310 | 97 | | Plus |
BO34539.pep Sequence
Translation from 16 to 2326
> BO34539.pep
MKPVSQSQAAYSSPHLVEPGVAKSTSPHIMTQQQPPWPSPISSSSSNPRG
KCWLILVLMAVLPLVADVGALPFLFTHIKPQINWTQPEMESWVIEEQPRS
IEPHLEPVLHPNRTHRALSSDSTDAEFLQRLVSIRHNQTASSRMLWYDVA
GGDGLVYPPFVDKALKLLNLKQVAFEIENSVMSKVTCTACRAGAGMLQHQ
IQSGKTDAELIRMITDYCTNLNIQSARVCQGVAQLFGSELIYVLKRVNLS
PDELCSFVIGDGCADVYNPYHEWEVIFPPVPKPPRLPDLPIPMEAAPFFK
VLHISDTHYDPHYAEGSNADCNEPLCCRLSSGRPATPNAAAGKWGDYRKC
DTPKRTVDHMLSHIAETHKDIDYILWTGDLPPHDVWNQTKEENLAIIKDT
VKQMVEMFPGVPIFPALGNHESAPVNSFPPPYVNQVDISISWLYDELDIQ
WRRWLPQSVTHTVRRGAFYSVLVRPGFRIISLNMNYCNNKNWWLLLNSTD
PATELQWFIYELQSAEFSNEKVHVIGHIPPGHSDCLKVWSRNFYKIISRY
ESTVTAQFYGHTHYDEFEMFYDPHDLNHPNGIAYIGPSVSPYYDLNPGYR
IYYVDGDHDATTRLVIDHESWIMNLKEANLYGYPIWYKLYTARAAYNMKA
LRPSDWNNLLNELTNNQELFELYYKYYWKNSPARPTCDAECKKRLICDCR
SGRSHDRKHFCAEVESKIDEESSKSWKSWFYKGLTNSAEDRTEEPAPTTD
GYGPFDVVIVNVGGASFLDH
BO34539.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3376-PC | 764 | CG3376-PC | 1..764 | 1..764 | 4194 | 100 | Plus |
CG3376-PA | 735 | CG3376-PA | 1..735 | 30..764 | 4046 | 100 | Plus |
CG3376-PD | 726 | CG3376-PD | 1..708 | 30..737 | 3901 | 100 | Plus |
CG3376-PB | 708 | CG3376-PB | 1..708 | 30..737 | 3901 | 100 | Plus |
CG15533-PA | 692 | CG15533-PA | 99..660 | 187..751 | 802 | 32.2 | Plus |