BO34540.complete Sequence
460 bp assembled on 2013-10-29
GenBank Submission: KX793887
> BO34540.complete
GAAGTTATCAGTCGACATGATCTCCTTTGGAGTGGCGCACGTGTTTTATA
TCAGCGCCTTTGGCTGGAAGCCCATAAAGTGGTTCATTGGACTGCTCTTG
TACGTGGCCGTATCGCTTTTTGTTTACTTCGTGCACACGAAACTGGACGA
GATTCTCATCATCGGAGTGCCCATCTACTGTTTCCTGATCACCACAATGC
TGTGGAGATCGCTGGCCCGCGCCGTGGACTCCAGGAACTTCCTCGCCGTG
TTCTGTGCCATCGGAGCCATTCTGTTTGTGATCTCCGACGCCCTGATCGC
GGTCACCATGTTCGTGGGCGTGCCCCTGCCCTGCGCCCGCCTCCAGATCA
TGATCACCTACTACGCCGCCCAGTTTGCCATTGCGCTGAGCACCGCGGAC
GACGGTCCTGCCCTCCAGCGCTCCCTTCGCAAGAAAATTAAGGCAAGCTT
TCTAGACCAT
BO34540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7582-RB | 429 | CG7582-PB | 1..426 | 17..442 | 2130 | 100 | Plus |
CG7582-RA | 765 | CG7582-PA | 440..762 | 120..442 | 1615 | 100 | Plus |
CG7582-RA | 765 | CG7582-PA | 280..382 | 17..119 | 515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7582-RB | 979 | CG7582-RB | 301..726 | 17..442 | 2130 | 100 | Plus |
CG7582-RA | 1190 | CG7582-RA | 615..937 | 120..442 | 1615 | 100 | Plus |
CG7582-RA | 1190 | CG7582-RA | 455..557 | 17..119 | 515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29680494..29680816 | 442..120 | 1615 | 100 | Minus |
3R | 32079331 | 3R | 29680874..29680976 | 119..17 | 515 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 14:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osvaldo | 1543 | Osvaldo OSV 1543bp | 846..900 | 283..229 | 104 | 65.5 | Minus |
BO34540.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:14 Download gff for
BO34540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-RB | 301..726 | 17..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:14:53 Download gff for
BO34540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-RB | 301..726 | 17..444 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:14:53 Download gff for
BO34540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29680491..29680816 | 120..444 | 99 | <- | Minus |
3R | 29680874..29680976 | 17..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:14 Download gff for
BO34540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25506213..25506538 | 120..444 | 99 | <- | Minus |
arm_3R | 25506596..25506698 | 17..119 | 100 | | Minus |
BO34540.pep Sequence
Translation from 16 to 460
> BO34540.pep
MISFGVAHVFYISAFGWKPIKWFIGLLLYVAVSLFVYFVHTKLDEILIIG
VPIYCFLITTMLWRSLARAVDSRNFLAVFCAIGAILFVISDALIAVTMFV
GVPLPCARLQIMITYYAAQFAIALSTADDGPALQRSLRKKIKASFLDH
BO34540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7582-PB | 142 | CG7582-PB | 1..142 | 1..142 | 721 | 100 | Plus |
CG7582-PA | 254 | CG7582-PA | 94..254 | 1..142 | 684 | 87.6 | Plus |