Clone BO34540 Report

Search the DGRC for BO34540

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:345
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG7582-RB
Protein status:BO34540.pep: Imported from assembly
Sequenced Size:460

Clone Sequence Records

BO34540.complete Sequence

460 bp assembled on 2013-10-29

GenBank Submission: KX793887

> BO34540.complete
GAAGTTATCAGTCGACATGATCTCCTTTGGAGTGGCGCACGTGTTTTATA
TCAGCGCCTTTGGCTGGAAGCCCATAAAGTGGTTCATTGGACTGCTCTTG
TACGTGGCCGTATCGCTTTTTGTTTACTTCGTGCACACGAAACTGGACGA
GATTCTCATCATCGGAGTGCCCATCTACTGTTTCCTGATCACCACAATGC
TGTGGAGATCGCTGGCCCGCGCCGTGGACTCCAGGAACTTCCTCGCCGTG
TTCTGTGCCATCGGAGCCATTCTGTTTGTGATCTCCGACGCCCTGATCGC
GGTCACCATGTTCGTGGGCGTGCCCCTGCCCTGCGCCCGCCTCCAGATCA
TGATCACCTACTACGCCGCCCAGTTTGCCATTGCGCTGAGCACCGCGGAC
GACGGTCCTGCCCTCCAGCGCTCCCTTCGCAAGAAAATTAAGGCAAGCTT
TCTAGACCAT

BO34540.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7582-RB 429 CG7582-PB 1..426 17..442 2130 100 Plus
CG7582-RA 765 CG7582-PA 440..762 120..442 1615 100 Plus
CG7582-RA 765 CG7582-PA 280..382 17..119 515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7582-RB 979 CG7582-RB 301..726 17..442 2130 100 Plus
CG7582-RA 1190 CG7582-RA 615..937 120..442 1615 100 Plus
CG7582-RA 1190 CG7582-RA 455..557 17..119 515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29680494..29680816 442..120 1615 100 Minus
3R 32079331 3R 29680874..29680976 119..17 515 100 Minus
Blast to na_te.dros performed 2014-11-28 14:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
Osvaldo 1543 Osvaldo OSV 1543bp 846..900 283..229 104 65.5 Minus

BO34540.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:14 Download gff for BO34540.complete
Subject Subject Range Query Range Percent Splice Strand
CG7582-RB 301..726 17..444 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:14:53 Download gff for BO34540.complete
Subject Subject Range Query Range Percent Splice Strand
CG7582-RB 301..726 17..444 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:14:53 Download gff for BO34540.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29680491..29680816 120..444 99 <- Minus
3R 29680874..29680976 17..119 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:14 Download gff for BO34540.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25506213..25506538 120..444 99 <- Minus
arm_3R 25506596..25506698 17..119 100   Minus

BO34540.pep Sequence

Translation from 16 to 460

> BO34540.pep
MISFGVAHVFYISAFGWKPIKWFIGLLLYVAVSLFVYFVHTKLDEILIIG
VPIYCFLITTMLWRSLARAVDSRNFLAVFCAIGAILFVISDALIAVTMFV
GVPLPCARLQIMITYYAAQFAIALSTADDGPALQRSLRKKIKASFLDH

BO34540.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7582-PB 142 CG7582-PB 1..142 1..142 721 100 Plus
CG7582-PA 254 CG7582-PA 94..254 1..142 684 87.6 Plus