Clone BO34543 Report

Search the DGRC for BO34543

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:345
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG34216-RB
Protein status:BO34543.pep: Imported from assembly
Sequenced Size:1042

Clone Sequence Records

BO34543.complete Sequence

1042 bp assembled on 2013-10-29

GenBank Submission: KX794565

> BO34543.complete
GAAGTTATCAGTCGACATGTGCATCCACTGCTGTCGCCTCCGCCGGACAC
CATGTCCACCGATTCCCTACAGCTGTCCACACTGCCCGGTGCGCACCATC
TCCAGCTGCTGTCCACTGGGCAGTCGGCCCCTCGCCGAGAATCCTTTCAT
AAGAGGTCCGGATCGGGAGCCAACCCCCGATCCCTGCGACACCTTGCCAC
CGCGCTGGCTGGACCTCAATCGACGGGTCATATTTGCCTTGGCAAAAAGA
TTATGTCGATCTCCAGAGGCAGCTCATTATATTTTGCTTCGCCTGTTGTA
TGCCAACTATAGAAAAGTGATGATGATATCCAGAAAACGAAGGAGATACA
AGGTGCCACTAAGTGGGTTTCCCGATCAGGATTTGTTCTCCGCCAGCGCA
CATTTCGATAGCAATGGTTACCTCTCCGATCCCATGGCTCCCGAAACTCT
GGGAAAGCTACTCCACATGATGCAGGACTACATCCTTCGGCTGAGAGCGC
TGAATCGCAAGTACAAGTGGTGTGGCAACGGCGAGGACTTTGGAGATGTA
TTGCTCCTATTGGGAGAGCAAGACGAACTGGTACGATTGTTAAGAGATCT
CTTTGGAGACAGCGATGTTGTGTCCATTCCAAAGCTCCTGAGCGCCCTTA
GCGAGCTGGAAATCAATAATTTATACGGAAAGTACAAGAAGAAAACAGTT
CCCTTTATGGTGAGAAGTATATCTGATCTCTACTCCGAAGTGACGGAACC
AAAGAGTCCAGTTTTGATATCATTAGCGCACATAGCCAACAAAGGAGTTT
CCCCTTATGGACCGAGCCACTTGAAAAACATCTTGAATTTCAGTCCAAAG
TCCTTGCCTATGATGGGTAAACACCCACCGCCTAAAAGAAGTAAAAGTGA
AAAATGCATTCCAACATCAAAAACGAATTTAACCCAAGCAGTACAAAATA
CCCAAAAAAAATCGAATTTCAAGGAACCAGCAGACAGTACTGGGATTTTA
AGTCCAACTTCCAAGAACTTACAAGCAAGCTTTCTAGACCAT

BO34543.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG34216-RB 1011 CG34216-PB 1..1008 17..1024 5040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG34216-RB 1590 CG34216-RB 159..1166 17..1024 5040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7703930..7704937 1024..17 5040 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:29:07 has no hits.

BO34543.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:20 Download gff for BO34543.complete
Subject Subject Range Query Range Percent Splice Strand
CG34216-RB 159..1166 17..1026 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:14:59 Download gff for BO34543.complete
Subject Subject Range Query Range Percent Splice Strand
CG34216-RB 159..1166 17..1026 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:14:59 Download gff for BO34543.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7703928..7704937 17..1026 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:20 Download gff for BO34543.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3591433..3592442 17..1026 99   Minus

BO34543.pep Sequence

Translation from 16 to 1042

> BO34543.pep
MCIHCCRLRRTPCPPIPYSCPHCPVRTISSCCPLGSRPLAENPFIRGPDR
EPTPDPCDTLPPRWLDLNRRVIFALAKRLCRSPEAAHYILLRLLYANYRK
VMMISRKRRRYKVPLSGFPDQDLFSASAHFDSNGYLSDPMAPETLGKLLH
MMQDYILRLRALNRKYKWCGNGEDFGDVLLLLGEQDELVRLLRDLFGDSD
VVSIPKLLSALSELEINNLYGKYKKKTVPFMVRSISDLYSEVTEPKSPVL
ISLAHIANKGVSPYGPSHLKNILNFSPKSLPMMGKHPPPKRSKSEKCIPT
SKTNLTQAVQNTQKKSNFKEPADSTGILSPTSKNLQASFLDH

BO34543.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG34216-PB 336 CG34216-PB 1..336 1..336 1794 100 Plus