BO34544.complete Sequence
1597 bp assembled on 2013-10-29
GenBank Submission: KX798993
> BO34544.complete
GAAGTTATCAGTCGACATGCACCGCCTACCCTGGAAGTGGGCGTGGCTGC
CACTGCTGCTACTAATTACTGCGAAATTGGAGCAGGTGGGCGGCAAAACA
TATCTGGATTGGGCGCGCACCGATAGTCAGCTAACGAGACTACCATTCTT
TGGCGGCGGTGTGGGTCACCTGCTGCGATATCTGCACCCATTGTCGATGA
GTCCCCCATCCGAACGCGGCAAAATCTCGGAGCTACGCAGCGAATTGGAT
GCCAACTATGTGAGCTACCGTGGTGCGCAGCTCTGGAAGCTGAACTTCAA
TGCCACCCGGGGCTCGTCCATGGCGGAGCGGGAGGAGGACGATGAGGCGG
CTGAGAAGCGACAGGTGCTGGCTTCACCGGATGCCCAATTCAATGAGGTG
GTCGCATTATTCGGCAGCGAGGTGTGGAATATCAACCAGGATGGCATCGA
CATCCTCATCGAGCAACGCAATGTAGCCGATGCACGAAAGTTCATGGACA
AGGTGGGCTACAGCTACAACATAATGATCGATGACATCGAGTCGGCGATC
GATGAGAGCTACGTGGAAGTTCCGGCCGTGGAACATCCATTGGATTCCGT
GCGCAACAATTCGCTGCCATGGATGGAAGTGCCGGGTTCAACGATGAACT
GGCGGCGTTACCACGATCAGGCGGACATTAAGCAGTTCCTGCAGACGCTG
CTCGAAACCTACTCGGAAAATGTGGAACTAATCCAGATAGGGGTCACGCG
CAACAAGCGACCGCTGGAGGTCATCAGGGTCTCCAATGGGAATCCGGACA
ATTGGGCGGTGTTCGTGGATGCTGGACTGCAGGCCAGGGATTGGTTAAGT
CCTGCCGCCCTCACTTACGCCATATCCAAGCTAACCCATCTCTGGGGCAG
GCCAAAGGGCAAGGACAAGGGTGAAGGTCAGAGGCAGAGCAGAGCGGAGA
AGGCGATGCGCCGCATCGATTGGTACTTCCTGCCATTGGCAAATCCAGAT
GGCTACCAGTACTCCCGCCAGACGGATCGCCTGTGGACCAAAAACCGTGG
CTACGACAGTGTCAGTGGTTGTTATGGTGTAAATTTGGATCGAAACTTCG
ACTACGGCTGGGACGGCACCGGATCGACGAGCAATCCCTGCAAGAATCTC
TATCGCGGAGCCCATAGCTTCTCCGAGCCAGAGAGCCGAGCCGTGTGCAG
CTTCCTCTCCGGAATGCGCGAGTATCTGGGTGCCTATGTCTCCCTGGGCG
GCTATGGACAGGCCATCACGTATCCCTGGGGCGATGCGGACTACGTGACG
GAGAATCAAAGGAATCTCAAGCAGACAGCTAGAAGGGCAGTTCTCGCACT
GAGGCGACTCAATCAGGCGGAGTATTCGTCGGGCACCAGTTATCGCCAAA
AGTTGGCGCGACCGGGCAACTCGGCCGATTGGGTGCAGGATCGCATTGGA
CCGCAGCTGGTGTTCAATATGTTCCTCAAGGATCAGGGACGCTATGGCTA
CCTGCTGCCGCCGCACTATATCGTGGAGTCCGGCGAGGAGGTCTTCGAGT
TCCTGCGCATCATTGCCCAGCAATTGCAGGCAAGCTTTCTAGACCAT
BO34544.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42264-RB | 1566 | CG42264-PB | 1..1563 | 17..1579 | 7815 | 100 | Plus |
| CG42264-RA | 1905 | CG42264-PA | 736..1902 | 413..1579 | 5835 | 100 | Plus |
| CG42264-RA | 1905 | CG42264-PA | 1..397 | 17..413 | 1985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42264-RB | 1748 | CG42264-RB | 69..1631 | 17..1579 | 7815 | 100 | Plus |
| CG42264-RA | 2087 | CG42264-RA | 804..1970 | 413..1579 | 5835 | 100 | Plus |
| CG42264-RA | 2087 | CG42264-RA | 69..465 | 17..413 | 1985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5773140..5773945 | 1579..774 | 4030 | 100 | Minus |
| X | 23542271 | X | 5776182..5776579 | 414..17 | 1990 | 100 | Minus |
| X | 23542271 | X | 5774005..5774370 | 778..413 | 1830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:29:11 has no hits.
BO34544.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:21 Download gff for
BO34544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42264-RB | 69..1631 | 17..1581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:15:01 Download gff for
BO34544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42264-RB | 69..1631 | 17..1581 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:15:01 Download gff for
BO34544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5773138..5773941 | 778..1581 | 99 | <- | Minus |
| X | 5774006..5774369 | 414..777 | 100 | <- | Minus |
| X | 5776183..5776579 | 17..413 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:21 Download gff for
BO34544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5667171..5667974 | 778..1581 | 99 | <- | Minus |
| arm_X | 5668039..5668402 | 414..777 | 100 | <- | Minus |
| arm_X | 5670216..5670612 | 17..413 | 100 | | Minus |
BO34544.pep Sequence
Translation from 16 to 1597
> BO34544.pep
MHRLPWKWAWLPLLLLITAKLEQVGGKTYLDWARTDSQLTRLPFFGGGVG
HLLRYLHPLSMSPPSERGKISELRSELDANYVSYRGAQLWKLNFNATRGS
SMAEREEDDEAAEKRQVLASPDAQFNEVVALFGSEVWNINQDGIDILIEQ
RNVADARKFMDKVGYSYNIMIDDIESAIDESYVEVPAVEHPLDSVRNNSL
PWMEVPGSTMNWRRYHDQADIKQFLQTLLETYSENVELIQIGVTRNKRPL
EVIRVSNGNPDNWAVFVDAGLQARDWLSPAALTYAISKLTHLWGRPKGKD
KGEGQRQSRAEKAMRRIDWYFLPLANPDGYQYSRQTDRLWTKNRGYDSVS
GCYGVNLDRNFDYGWDGTGSTSNPCKNLYRGAHSFSEPESRAVCSFLSGM
REYLGAYVSLGGYGQAITYPWGDADYVTENQRNLKQTARRAVLALRRLNQ
AEYSSGTSYRQKLARPGNSADWVQDRIGPQLVFNMFLKDQGRYGYLLPPH
YIVESGEEVFEFLRIIAQQLQASFLDH
BO34544.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42264-PB | 521 | CG42264-PB | 1..521 | 1..521 | 2775 | 100 | Plus |
| CG42264-PA | 634 | CG42264-PA | 245..634 | 132..521 | 2086 | 100 | Plus |
| CG42264-PA | 634 | CG42264-PA | 1..132 | 1..132 | 695 | 100 | Plus |
| CG3108-PA | 1132 | CG3108-PA | 710..1112 | 71..520 | 622 | 30.6 | Plus |
| CG3097-PA | 445 | CG3097-PA | 32..442 | 77..523 | 612 | 33.2 | Plus |
| CG4017-PA | 424 | CG4017-PA | 115..408 | 211..513 | 432 | 30.5 | Plus |
