BO34545.complete Sequence
946 bp assembled on 2013-10-29
GenBank Submission: KX795524
> BO34545.complete
GAAGTTATCAGTCGACATGTCGGACCACGCATTTATCGCCGAGCAGATTG
CAAGTGGCCTTTACTCCTTGGAGCCCAAGCTCAAGGGAAAGAGTTTCGTC
TGGAATGTTTTAAGCGGGATTATTAAGGATGATGGATCAATTTTAAACGA
CTTGGTTTACTGCCGCTCATGTCGAAAAATTCCTAAAATGTGTTGGCAAT
CAAACTTCAAATTTAGCCAGGCACAAATGTTGTCAATCTTTTCGGCAACC
AACTGCCCTACGGATTGTGTCTGCTCCAGACAAAAAGGAGGCGTTGAATG
CAGTTTCCAAGTGGATTGCGGAGGACTGCCGGCCGTTTTCGGCTGCGGTG
TACTTGTAGTTGCGGATGTTGACATTATGTCTGATGCCTTTCCACACGAA
GAGGATATGCTACGTCTTGATGCCGTGGGTGATGGCGATGTTGAACCGGA
ACCCGAGCCTGATAACGATCCCGAATTGGATAACATGGATGATCATGTTG
ATGATTATCGTAACAATTCATCGGCTGGGAGCATTAAGAACAATGGCTAT
CAGCAGCACACCGTATCTTCGCACCAGCAGCATAACGGTGAATCGCAGAC
TTCGGATAAATCCGGACGTCGCATCCGTAACCGACGAAGACGCAGTAGCA
ATGACACCGATTACGTTGAAGCGGCGAGAAAGCGTAGAAATGTGGAGACT
TCGAATAGAGATAGAGACTGGCATAGAGAGCGGGATAGGGAGCGAGACAG
AAAGCATGAAAGCGACAGCGAGTACGAGTGCGAGCTGATCGGAAAACGGA
TGGCCAGCCACTTCCGGCGTATGCGTCCGGATCAGCGACTTTTCGCCGAA
CGGATCATTAGCGAGGTGTTGGTCTACGGCCGAATGAATCGCCTTTCGTT
CGAGACCCAATTTAGTATGGGTCATAAAGCAAGCTTTCTAGACCAT
BO34545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4004-RC | 915 | CG4004-PC | 1..912 | 17..928 | 4560 | 100 | Plus |
| CG4004-RE | 960 | CG4004-PE | 393..957 | 364..928 | 2825 | 100 | Plus |
| CG4004-RD | 960 | CG4004-PD | 393..957 | 364..928 | 2825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4004-RC | 1288 | CG4004-RC | 56..967 | 17..928 | 4560 | 100 | Plus |
| CG4004-RE | 2237 | CG4004-RE | 738..1302 | 364..928 | 2825 | 100 | Plus |
| CG4004-RD | 1985 | CG4004-RD | 486..1050 | 364..928 | 2825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12746868..12747432 | 364..928 | 2825 | 100 | Plus |
| X | 23542271 | X | 12746372..12746720 | 17..365 | 1745 | 100 | Plus |
| 2R | 25286936 | 2R | 1093327..1093588 | 83..345 | 965 | 92 | Plus |
| 2L | 23513712 | 2L | 20220521..20220793 | 345..68 | 870 | 89.2 | Minus |
| 2L | 23513712 | 2L | 20205452..20205699 | 93..345 | 775 | 88.9 | Plus |
| 2R | 25286936 | 2R | 1278158..1278195 | 120..83 | 190 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 14:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 494..793 | 45..345 | 430 | 61.6 | Plus |
BO34545.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:23 Download gff for
BO34545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RC | 56..967 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:15:03 Download gff for
BO34545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RC | 56..967 | 17..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:15:03 Download gff for
BO34545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12746372..12746719 | 17..364 | 100 | -> | Plus |
| X | 12746869..12747432 | 365..930 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:23 Download gff for
BO34545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12640405..12640752 | 17..364 | 100 | -> | Plus |
| arm_X | 12640902..12641465 | 365..930 | 99 | | Plus |
BO34545.pep Sequence
Translation from 16 to 946
> BO34545.pep
MSDHAFIAEQIASGLYSLEPKLKGKSFVWNVLSGIIKDDGSILNDLVYCR
SCRKIPKMCWQSNFKFSQAQMLSIFSATNCPTDCVCSRQKGGVECSFQVD
CGGLPAVFGCGVLVVADVDIMSDAFPHEEDMLRLDAVGDGDVEPEPEPDN
DPELDNMDDHVDDYRNNSSAGSIKNNGYQQHTVSSHQQHNGESQTSDKSG
RRIRNRRRRSSNDTDYVEAARKRRNVETSNRDRDWHRERDRERDRKHESD
SEYECELIGKRMASHFRRMRPDQRLFAERIISEVLVYGRMNRLSFETQFS
MGHKASFLDH
BO34545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4004-PC | 304 | CG4004-PC | 1..304 | 1..304 | 1625 | 100 | Plus |
| CG4004-PE | 319 | CG4004-PE | 130..319 | 115..304 | 1003 | 98.9 | Plus |
| CG4004-PD | 319 | CG4004-PD | 130..319 | 115..304 | 1003 | 98.9 | Plus |
| CG4004-PA | 319 | CG4004-PA | 130..319 | 115..304 | 1003 | 98.9 | Plus |
| CG4004-PB | 339 | CG4004-PB | 148..339 | 113..304 | 1002 | 98.4 | Plus |
