BO34547.complete Sequence
1363 bp assembled on 2013-10-29
GenBank Submission: KX797076
> BO34547.complete
GAAGTTATCAGTCGACATGTCCAGAAATAGGGCTGCCATGGTCAGCGCCT
TTCGGCTCTTCCTGCGACCAGCGACCACCACCACCCATAGAAGTCTCGCC
CTGCGTTTGGCCCCCGGCACCACCTTCGCCCTGCACTTACGGCCATGTCA
TGAGCTTCAGCAGCACAGAAGCTTCGCATCCACGGCGGAGGATGGCGAAA
CGGACAAGCATAAAAAACCGACGACGGGAGATATCACGCGACTCACTTTG
GCCGAGCTGAGGACGCGGCTAAAAGCCCTCGGACTGAGTGCAGCGGGCCG
AAAACAAGTCCTAGTTGAACGGCTAACAAGATCTACTACCTGCAGTGCCA
CAACGTTGCCAAGAACAACAGGTTCCAATTTGTCGCCGGAGGTGTTCATT
GGGGGGCTCGTAAATAATTCCAACACGACCTCTGAACCCAAAAACACTGT
TCAACAAAATGAAGACATCTATGTGGAATACGTGAATGGCATGCCACACA
TGACTGTACGACTTCCCAGTCGCAATGAACTCTGCCAGTTTGCCCTGAAA
CCCATCTCCCACAACGTTGGTGATCTGTTAGCCATGCTCAGGGCTGAGGA
TCGGGGCATCGATCGAGCTGCGGTGATCAACAAGCATGGTGTGCGAATCG
CGTCGTCCTGCACCATCGAAAGCTTGCTGGATGACTCGTTTAGCATACAA
ATCAACAATCGCACATTGGATGTGAATCCTCCCAAACGTGACAAAGTCAC
ATTGGAGTCCATGGACAAAGTGGGCGATGTTCGTAAGGTTATTGCTCAGC
TCTACGAGGCATTCAACGTCGGAGAATATCAGCTGGAGAAGAGCAATCAA
TTGGCCAAAGAACTGGAGACCCTACGCTATGAACTAGAACCACTGGAAGA
GAAAAAACTGGAACTCAGCAAAAAGGCCGCTCGTCGCACTAACTTTATGA
CTTGGATGGGTTTGGGCCTAATGTCGGTGCAATTTGGCATTTTGGCACGA
CTGACTTGGTGGGAATACTCTTGGGATATTATGGAACCCGTTACATATTT
TGTTACTTACGGGACGACAATGGCAATGTATGCCTACTATTGTGTCACTA
AGAGGGAATATATGATGGAGGATGTGAAGAATCGCGAATTCTCACTTTCC
CTTTATAGGAACGCCAAAAAGGTTCAGTTCGATGTAGAACACTACAACGA
ACTGAAGCGAAAGTCGGCGGAGTTGGAGTACAATCTCAGAAGGATCAACG
ACCCGCTCAACATGCAATTGCCATCGCATTTGGTTCGGACCCAGGAAAAC
ACGCCACCAACCTTAACTGAGGAAAAGGCGGAGCGGAAATACACTGCAAG
CTTTCTAGACCAT
BO34547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18769-RG | 1332 | CG18769-PG | 1..1329 | 17..1345 | 6645 | 100 | Plus |
| CG18769-RH | 1374 | CG18769-PH | 484..1371 | 458..1345 | 4440 | 100 | Plus |
| CG18769-RD | 1101 | CG18769-PD | 214..1098 | 461..1345 | 4425 | 100 | Plus |
| CG18769-RH | 1374 | CG18769-PH | 1..214 | 17..230 | 1070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:28:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18769-RG | 1961 | CG18769-RG | 201..1530 | 16..1345 | 6650 | 100 | Plus |
| CG18769-RH | 2003 | CG18769-RH | 685..1572 | 458..1345 | 4440 | 100 | Plus |
| CG18769-RE | 1543 | CG18769-RE | 228..1112 | 461..1345 | 4425 | 100 | Plus |
| CG18769-RH | 2003 | CG18769-RH | 201..415 | 16..230 | 1075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6591478..6591718 | 1105..1345 | 1205 | 100 | Plus |
| 3L | 28110227 | 3L | 6587162..6587394 | 229..461 | 1165 | 100 | Plus |
| 3L | 28110227 | 3L | 6590603..6590835 | 461..693 | 1165 | 100 | Plus |
| 3L | 28110227 | 3L | 6591212..6591418 | 900..1106 | 1035 | 100 | Plus |
| 3L | 28110227 | 3L | 6551832..6551949 | 16..133 | 590 | 100 | Plus |
| 3L | 28110227 | 3L | 6590891..6590999 | 691..799 | 545 | 100 | Plus |
| 3L | 28110227 | 3L | 6591055..6591160 | 796..901 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 6562321..6562418 | 133..230 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:28:42 has no hits.
BO34547.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:08 Download gff for
BO34547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18769-RG | 202..1530 | 17..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:14:49 Download gff for
BO34547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18769-RG | 202..1530 | 17..1347 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:14:49 Download gff for
BO34547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6590894..6590999 | 694..799 | 100 | -> | Plus |
| 3L | 6591059..6591160 | 800..901 | 100 | -> | Plus |
| 3L | 6590604..6590835 | 462..693 | 100 | -> | Plus |
| 3L | 6551833..6551949 | 17..133 | 100 | -> | Plus |
| 3L | 6562322..6562418 | 134..230 | 100 | -> | Plus |
| 3L | 6587164..6587394 | 231..461 | 100 | -> | Plus |
| 3L | 6591214..6591417 | 902..1105 | 100 | -> | Plus |
| 3L | 6591479..6591718 | 1106..1347 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:08 Download gff for
BO34547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6544933..6545049 | 17..133 | 100 | -> | Plus |
| arm_3L | 6555422..6555518 | 134..230 | 100 | -> | Plus |
| arm_3L | 6580264..6580494 | 231..461 | 100 | -> | Plus |
| arm_3L | 6583704..6583935 | 462..693 | 100 | -> | Plus |
| arm_3L | 6583994..6584099 | 694..799 | 100 | -> | Plus |
| arm_3L | 6584159..6584260 | 800..901 | 100 | -> | Plus |
| arm_3L | 6584314..6584517 | 902..1105 | 100 | -> | Plus |
| arm_3L | 6584579..6584818 | 1106..1347 | 99 | | Plus |
BO34547.pep Sequence
Translation from 16 to 1363
> BO34547.pep
MSRNRAAMVSAFRLFLRPATTTTHRSLALRLAPGTTFALHLRPCHELQQH
RSFASTAEDGETDKHKKPTTGDITRLTLAELRTRLKALGLSAAGRKQVLV
ERLTRSTTCSATTLPRTTGSNLSPEVFIGGLVNNSNTTSEPKNTVQQNED
IYVEYVNGMPHMTVRLPSRNELCQFALKPISHNVGDLLAMLRAEDRGIDR
AAVINKHGVRIASSCTIESLLDDSFSIQINNRTLDVNPPKRDKVTLESMD
KVGDVRKVIAQLYEAFNVGEYQLEKSNQLAKELETLRYELEPLEEKKLEL
SKKAARRTNFMTWMGLGLMSVQFGILARLTWWEYSWDIMEPVTYFVTYGT
TMAMYAYYCVTKREYMMEDVKNREFSLSLYRNAKKVQFDVEHYNELKRKS
AELEYNLRRINDPLNMQLPSHLVRTQENTPPTLTEEKAERKYTASFLDH
BO34547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18769-PG | 443 | CG18769-PG | 1..443 | 1..443 | 2279 | 100 | Plus |
| CG18769-PH | 457 | CG18769-PH | 1..457 | 1..443 | 1853 | 81 | Plus |
| CG18769-PD | 366 | CG18769-PD | 72..366 | 149..443 | 1532 | 100 | Plus |
| CG18769-PB | 366 | CG18769-PB | 72..366 | 149..443 | 1532 | 100 | Plus |
| CG18769-PC | 366 | CG18769-PC | 72..366 | 149..443 | 1532 | 100 | Plus |
| CG18769-PD | 366 | CG18769-PD | 1..72 | 1..72 | 371 | 98.6 | Plus |
| CG18769-PB | 366 | CG18769-PB | 1..72 | 1..72 | 371 | 98.6 | Plus |
