Clone BO34549 Report

Search the DGRC for BO34549

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:345
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG13707-RC
Protein status:BO34549.pep: Imported from assembly
Sequenced Size:334

Clone Sequence Records

BO34549.complete Sequence

334 bp assembled on 2013-10-29

GenBank Submission: KX795075

> BO34549.complete
GAAGTTATCAGTCGACATGCAGCGCCTGGACAGGATGATCGAGGCTCTGC
GGGACTATAGCGGACCCACGATATGCCACGAGTGGCCCTATCCCCTTATC
TTCAAAGGCACAATCGACGAGGCACATGTCGCACAAATACTCAATGCCAG
CGAACTGGATTTGGATACGAAGTTGGTCAAGGTGTCCGGCGGAAGGAACT
GCATCCATGTGGAATCCGATGTGGTCACAGCTCAAAGGCGCTCCAGATTG
CTGTGGTTCTCCAGAAGAAGCAGGGGGAAACGAGCTGAGCGCTTAAAGGA
ACCTAATCCTGTAGTTGCAAGCTTTCTAGACCAT

BO34549.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13707-RB 492 CG13707-PB 190..489 17..316 1500 100 Plus
CG13707-RD 303 CG13707-PD 1..300 17..316 1500 100 Plus
CG13707-RC 303 CG13707-PC 1..300 17..316 1500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13707-RB 988 CG13707-RB 398..697 17..316 1500 100 Plus
CG13707-RD 2106 CG13707-RD 1516..1815 17..316 1500 100 Plus
CG13707-RC 1252 CG13707-RC 662..961 17..316 1500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4838082..4838381 316..17 1500 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:29:29 has no hits.

BO34549.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:26 Download gff for BO34549.complete
Subject Subject Range Query Range Percent Splice Strand
CG13707-RC 662..961 17..318 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:15:09 Download gff for BO34549.complete
Subject Subject Range Query Range Percent Splice Strand
CG13707-RC 662..961 17..318 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:15:09 Download gff for BO34549.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4838079..4838381 17..318 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:26 Download gff for BO34549.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4838079..4838381 17..318 99   Minus

BO34549.pep Sequence

Translation from 16 to 334

> BO34549.pep
MQRLDRMIEALRDYSGPTICHEWPYPLIFKGTIDEAHVAQILNASELDLD
TKLVKVSGGRNCIHVESDVVTAQRRSRLLWFSRRSRGKRAERLKEPNPVV
ASFLDH

BO34549.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13707-PD 100 CG13707-PD 1..100 1..100 522 100 Plus
CG13707-PC 100 CG13707-PC 1..100 1..100 522 100 Plus
CG13707-PB 163 CG13707-PB 64..163 1..100 522 100 Plus