BO34550.complete Sequence
763 bp assembled on 2013-10-29
GenBank Submission: KX794577
> BO34550.complete
GAAGTTATCAGTCGACATGCGGTTCGGCAGAATTGATGTGACAGAGGCTC
AGTTCTCAATTATAGCCATTCATTTGGTTTCGGCTGCACTGGGTCCTGAG
ATCTGGCTCACCAAGATACCAATCGTGGGCCTTTCATGGAATTACACAAT
ATTAGTATTTATCACATTCGGTTATACCTTGAATATAATCAATTTCCTAA
AAATGTTTACTCAAGGCGGCAGTGGCAAAAACGGCTCCTCAGTTGCTGGC
ACCAGTGTCCTCTCGCCCAGCATTCCGCTCACGCTGGTGGTGCTGCCCGC
CCTGATGATTGCCCAGAAGTCGCCGCAGAACCTCTTCACCGAGCACGCAT
CGGTGTACATCATGGCGTTCGGCATGGTGGCCGCCAAGGTCACCAATAAG
CTGGTGATCGCTCACATGACCAAGGCGGAGATGGAGTATCTGGACTGGTC
GCTGCTCGGCCCCTCGCTGCTGTTCCTCAACCAGTACTTCAACTGCATCG
TGCCAGAGATCTGGCTACTGTGGTTCACGCTCATCTGGGGCACCCAGGAT
CTGCTGCGCTACTGCGCCCAGGTGTGCCTCGAGATTTGCCAGCACCTGCG
CATCGATCTCTTCCGGATACCGTACACGCCCAAAGGCGCGACCCCGCATC
CAGCCACCGCATCGGTGAGCAGCCAGAGCAACTTTGGCAGCAGTGCGGAC
AAGAACGGTGGCAGCGCGCATCGAAAGTCGAAGAGCAAACCGCACGCAAG
CTTTCTAGACCAT
BO34550.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bbc-RA | 1254 | CG6016-PA | 523..1251 | 17..745 | 3645 | 100 | Plus |
| bbc-RB | 1254 | CG6016-PB | 729..1251 | 223..745 | 2570 | 99.4 | Plus |
| bbc-RC | 1254 | CG6016-PC | 730..1251 | 224..745 | 2550 | 99.2 | Plus |
| bbc-RB | 1254 | CG6016-PB | 523..623 | 17..117 | 505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bbc-RA | 2031 | CG6016-RA | 914..1642 | 17..745 | 3645 | 100 | Plus |
| bbc-RB | 2579 | CG6016-RB | 1120..1642 | 223..745 | 2570 | 99.4 | Plus |
| bbc-RC | 2579 | CG6016-RC | 1121..1642 | 224..745 | 2550 | 99.2 | Plus |
| bbc-RB | 2579 | CG6016-RB | 914..1014 | 17..117 | 505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13487571..13487910 | 745..406 | 1700 | 100 | Minus |
| 2R | 25286936 | 2R | 13487974..13488132 | 406..248 | 795 | 100 | Minus |
| 2R | 25286936 | 2R | 13489741..13489875 | 248..114 | 675 | 100 | Minus |
| 2R | 25286936 | 2R | 13491435..13491533 | 115..17 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:29:33 has no hits.
BO34550.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:28 Download gff for
BO34550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bbc-RA | 914..1642 | 17..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:15:10 Download gff for
BO34550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bbc-RA | 914..1642 | 17..747 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:15:10 Download gff for
BO34550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13487974..13488132 | 248..406 | 100 | <- | Minus |
| 2R | 13489742..13489873 | 116..247 | 100 | <- | Minus |
| 2R | 13491435..13491533 | 17..115 | 100 | | Minus |
| 2R | 13487569..13487909 | 407..747 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:28 Download gff for
BO34550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9375074..9375414 | 407..747 | 99 | <- | Minus |
| arm_2R | 9375479..9375637 | 248..406 | 100 | <- | Minus |
| arm_2R | 9377247..9377378 | 116..247 | 100 | <- | Minus |
| arm_2R | 9378940..9379038 | 17..115 | 100 | | Minus |
BO34550.pep Sequence
Translation from 16 to 763
> BO34550.pep
MRFGRIDVTEAQFSIIAIHLVSAALGPEIWLTKIPIVGLSWNYTILVFIT
FGYTLNIINFLKMFTQGGSGKNGSSVAGTSVLSPSIPLTLVVLPALMIAQ
KSPQNLFTEHASVYIMAFGMVAAKVTNKLVIAHMTKAEMEYLDWSLLGPS
LLFLNQYFNCIVPEIWLLWFTLIWGTQDLLRYCAQVCLEICQHLRIDLFR
IPYTPKGATPHPATASVSSQSNFGSSADKNGGSAHRKSKSKPHASFLDH
BO34550.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bbc-PA | 417 | CG6016-PA | 175..417 | 1..243 | 1267 | 100 | Plus |
| bbc-PC | 417 | CG6016-PC | 175..417 | 1..243 | 1080 | 86.9 | Plus |
| bbc-PB | 417 | CG6016-PB | 175..417 | 1..243 | 1079 | 87.7 | Plus |
| bbc-PE | 373 | CG6016-PE | 175..373 | 1..243 | 984 | 81.9 | Plus |
