BO34551.complete Sequence
2056 bp assembled on 2014-03-03
GenBank Submission: KX794588
> BO34551.complete
GAAGTTATCAGTCGACATGCCGCTGCCCAAACGATCCATAGAACCCGTGC
ATGTGGCCCGCTCCGTGTATCAGCAGGATGAGCTGCAATCCGTGGAGCTG
GAGACGGTCACCAACACCACGCTGACGAACATCATTCGCCAGCTGTCCTC
GCTGTCCAAGCACGCAGAGGATGTGTTCGGTGAACTGGCCCGCGACGTGG
GCAACATCGGGGATCGAGCTAACTCCCTGCAGGCGCGCATCGATCGCCTA
GCTATCAAAGTTACCCAGCTGGACAGCACAGTTGAGGAGGTGCCCTTGAC
GGACATTACCCGAAAGAAGGCCTTCAAGTCGGCCAAGGTTTTTGATCAAC
AGATCTTCTCGCGCGCCACCATGCCGGCACCAATGATGGACACATATGCC
CAGTGCGACAAACCGCCGCCCCTCGACAAGCTTAATGTCTATCGAGACGA
TGGCAAGGATGGTCTTAAGTTCTACACGGATCCGAACTACTTCTTTGAGT
TGTGGCGACAGGAGATGCTGAAGGATACCGAACGTGTGATGCACGACAAG
GGCAAGAAGCTGAACAGACCGCGGCAGGATGGCGGTGCCGGCGGAGCTGC
TGGACGTGGCAATAAGAAACAGAAGACCAAAATAAGGGTGCCGCACAATA
CGCGCGAACAGCAGCGACAACGTGCACTGGTGCACGGCGAAACATTGATG
CCCAACAACGTCATCTACCGCACACCGAATTCCATGGTCAACGAAGAAGC
CGGATACGGAATTCAGCTAGTCAAAATACAGACTGTGGGCGAGGCTGACA
TCGATTTGCGGCATAGCACTCTCGATGCGCACCACCAAGTTGTCGGTAAT
ATCCAAGACGTAGATACAGTAAAGCCTTATAATATGCTTTCGCATTTGGA
GAATAACAGTAATGTCACCAAGCAAACCGCCGTTGCGATTGCAGATATGG
GAGTGTACGATACACGTCCGCCACGTCCTAACTCGATCGAATTGAACCGA
AGCTATCAGTCGGAGCAGATCGATGGTAGCACCTACGAGCAGCTTCCACC
GCAGATGGGTAATCAGTATGCTGCCACCTTCGGCAACGGCATGGGTGGCC
CCCAGCAGATGCACATGCAGCATCAGCAGATGTATGACGCCGGAATGTAT
CAGTCGCATGCGCTGTACGGCCAAACTGGACAGGGAGTGATGTCGCCGGA
GCCCATCTACGGACCGGGAACACCGTCGCGTAACAAACCGCGTCCGTCGC
AGCCGCCACCGGCTCCGCCATCGAATGGCAGCGGTGGTGGTACGCCCACA
GCCTCCAATGCCAACACTCCGACAAGGGGCAGAAGTATGTCGACCAGTCG
GGATGCCTTGCCACCGCCTCCACCAGTTCCAGACGTCATTTCACCAATGT
CTGGCATGAACGGAGTCAACAGCGGGCATATGGCGGCCAAACTGCTTGGC
CGGGCGAACAGTTCGTCGGGAGCTGGATCTCCCAACAGCGTCCAGAATGC
CAATGATATGGTCATGACGCAACTGAGCAATACTTTCCACAGCATCGGTA
TGACGGGCAATCAACTGAACTCCCTTAGCGACTTGCCGCCACCGCCGCCG
GTTCCAGATCAGCACTCGCCTAAGATGTCGCCACCTAATGCCGCGCCACC
ACCGCCGCCGCCACCGCCTCCAGTCGAGGAAGGCATGGGCAGTGGCAACC
AACACACGCTGCGCCCGCATCAAATTCTTCCCAAATCACTGGCCAATGGC
GAAATGCAGCAGCCCGGCCAACAAAATGGTGTGCCTCACATTGTCGCACC
CAAGAAGATGCTGCCTCCATTCCATGACCCACGCAACGACTTGATGAAGG
CCATTCGAGATGGTATTACTCTACGTAAAGTTGAAAAGTCAGAGCAAAAG
GAAATTGAACGAAACGCGGCGCCATTGGATGTGGCTTCAATCTTGGCCAG
ACGTGTGGCTATCGAATTATCCGAGTCCGAGGATTCGGATAGCGAAGACG
ACAGCGAGGGCTGGATGGAACCGAACGAAACATCGGCTGCAAGCTTTCTA
GACCAT
BO34551.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SCAR-RD | 2025 | CG4636-PD | 1..2022 | 17..2038 | 10110 | 100 | Plus |
| SCAR-RC | 1923 | CG4636-PC | 746..1920 | 864..2038 | 5875 | 100 | Plus |
| SCAR-RF | 1944 | CG4636-PF | 846..1941 | 943..2038 | 5480 | 100 | Plus |
| SCAR-RC | 1923 | CG4636-PC | 1..745 | 17..761 | 3725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:57:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SCAR-RD | 3118 | CG4636-RD | 363..2385 | 16..2038 | 10115 | 100 | Plus |
| SCAR-RC | 2914 | CG4636-RC | 1007..2181 | 864..2038 | 5875 | 100 | Plus |
| SCAR-RF | 3037 | CG4636-RF | 1209..2304 | 943..2038 | 5480 | 100 | Plus |
| SCAR-RC | 2914 | CG4636-RC | 261..1006 | 16..761 | 3730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10977961..10978706 | 16..761 | 3730 | 100 | Plus |
| 2L | 23513712 | 2L | 10980443..10981112 | 943..1612 | 3350 | 100 | Plus |
| 2L | 23513712 | 2L | 10981176..10981431 | 1610..1865 | 1280 | 100 | Plus |
| 2L | 23513712 | 2L | 10981486..10981662 | 1862..2038 | 885 | 100 | Plus |
| 2L | 23513712 | 2L | 10978880..10978985 | 762..867 | 515 | 99.1 | Plus |
| 2L | 23513712 | 2L | 10979631..10979713 | 862..944 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:57:26 has no hits.
BO34551.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:23:13 Download gff for
BO34551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCAR-RD | 364..2385 | 17..2040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:27:47 Download gff for
BO34551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCAR-RD | 364..2385 | 17..2040 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:27:47 Download gff for
BO34551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10981179..10981428 | 1613..1862 | 100 | -> | Plus |
| 2L | 10981487..10981662 | 1863..2040 | 98 | | Plus |
| 2L | 10977962..10978706 | 17..761 | 100 | -> | Plus |
| 2L | 10978880..10978981 | 762..863 | 100 | -> | Plus |
| 2L | 10979633..10979713 | 864..944 | 100 | -> | Plus |
| 2L | 10980445..10981112 | 945..1612 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:23:13 Download gff for
BO34551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10977962..10978706 | 17..761 | 100 | -> | Plus |
| arm_2L | 10978880..10978981 | 762..863 | 100 | -> | Plus |
| arm_2L | 10979633..10979713 | 864..944 | 100 | -> | Plus |
| arm_2L | 10980445..10981112 | 945..1612 | 100 | -> | Plus |
| arm_2L | 10981179..10981428 | 1613..1862 | 100 | -> | Plus |
| arm_2L | 10981487..10981662 | 1863..2040 | 98 | | Plus |
BO34551.pep Sequence
Translation from 16 to 2056
> BO34551.pep
MPLPKRSIEPVHVARSVYQQDELQSVELETVTNTTLTNIIRQLSSLSKHA
EDVFGELARDVGNIGDRANSLQARIDRLAIKVTQLDSTVEEVPLTDITRK
KAFKSAKVFDQQIFSRATMPAPMMDTYAQCDKPPPLDKLNVYRDDGKDGL
KFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQDGGAGGAAGRGNK
KQKTKIRVPHNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAGYGIQ
LVKIQTVGEADIDLRHSTLDAHHQVVGNIQDVDTVKPYNMLSHLENNSNV
TKQTAVAIADMGVYDTRPPRPNSIELNRSYQSEQIDGSTYEQLPPQMGNQ
YAATFGNGMGGPQQMHMQHQQMYDAGMYQSHALYGQTGQGVMSPEPIYGP
GTPSRNKPRPSQPPPAPPSNGSGGGTPTASNANTPTRGRSMSTSRDALPP
PPPVPDVISPMSGMNGVNSGHMAAKLLGRANSSSGAGSPNSVQNANDMVM
TQLSNTFHSIGMTGNQLNSLSDLPPPPPVPDQHSPKMSPPNAAPPPPPPP
PPVEEGMGSGNQHTLRPHQILPKSLANGEMQQPGQQNGVPHIVAPKKMLP
PFHDPRNDLMKAIRDGITLRKVEKSEQKEIERNAAPLDVASILARRVAIE
LSESEDSDSEDDSEGWMEPNETSAASFLDH
BO34551.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SCAR-PD | 674 | CG4636-PD | 1..674 | 1..674 | 3552 | 100 | Plus |
| SCAR-PF | 647 | CG4636-PF | 1..647 | 1..674 | 3378 | 96 | Plus |
| SCAR-PB | 641 | CG4636-PB | 1..641 | 1..674 | 3341 | 95.1 | Plus |
| SCAR-PC | 640 | CG4636-PC | 1..640 | 1..674 | 3331 | 94.8 | Plus |
| SCAR-PE | 632 | CG4636-PE | 1..618 | 1..679 | 2881 | 83.9 | Plus |
