BO34553.complete Sequence
904 bp assembled on 2013-10-29
GenBank Submission: KX795238
> BO34553.complete
GAAGTTATCAGTCGACATGGCTCTGTACGAAACCGTTGAGAAGGGCGCTA
AGAATTCGCCGAGCTACAGCCTGTATTTCAAAAACAAGTGCGGCAATGTC
ATCTCGCCGATGCACGACATTCCACTGTACGCCAACGAGGAGAAAACTAT
CTACAACATGGTGGTGGAGGTGCCACGTTGGACCAACGCGAAAATGGAGA
TTAGCTTGAAGACCCCTATGAATCCCATCAAGCAGGACATCAAGAAGGGT
AAGCTGCGGTTCGTGGCCAACTGCTTCCCGCACAAGGGCTACATCTGGAA
CTACGGAGCCCTGCCCCAGACCTGGGAAAACCCCGACCACATCGAGCCCT
CCACCGGCTGCAAGGGTGACAACGATCCCATCGATGTCATCGAGATTGGC
TACCGAGTGGCTAAGCGCGGCGACGTGCTGAAGGTCAAGGTGCTGGGCAC
CATTGCCTTGATTGACGAGGGCGAAACCGACTGGAAGATAATCGCCATCG
ATGTGAACGATCCGTTGGCCTCGAAAGTCAATGATATCGCCGATGTGGAC
CAGTACTTCCCGGGTCTGCTTCGTGCCACCGTTGAGTGGTTCAAGATCTA
CAAGATCCCCGATGGCAAGCCTGAGAATCAGTTTGCTTTCAACGGCGATG
CCAAGAATGCGGACTTTGCCAACACCATCATTGCCGAGACCCACAAGTTC
TGGCAGAACTTGGTGCACCAGAGCCCCGCATCCGGGTCCATCTCCACCAC
CAACATCACCAACCGCAACTCGGAGCACGTCATTCCCAAGGAGGAGGCCG
AGAAGATACTGGCCGAGGCCCCCGATGGCGGCCAGGTCGAGGAGGTGTCT
GATACAGGTAAGGTTCACTATATTAGATCGAACTTAGCAAGCTTTCTAGA
CCAT
BO34553.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nurf-38-RC | 873 | CG4634-PC | 1..870 | 17..886 | 4350 | 100 | Plus |
| Nurf-38-RA | 1017 | CG4634-PA | 141..985 | 13..857 | 4210 | 99.9 | Plus |
| Nurf-38-RB | 873 | CG4634-PB | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:11:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nurf-38-RC | 1281 | CG4634-RC | 134..1007 | 13..886 | 4355 | 99.9 | Plus |
| Nurf-38-RB | 1144 | CG4634-RB | 134..978 | 13..857 | 4210 | 99.9 | Plus |
| Nurf-38-RA | 1178 | CG4634-RA | 168..1012 | 13..857 | 4210 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:11:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24559830..24560227 | 595..198 | 1990 | 100 | Minus |
| 2R | 25286936 | 2R | 24559623..24559776 | 747..594 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 24559426..24559564 | 886..748 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 24560292..24560410 | 199..81 | 595 | 100 | Minus |
| 2R | 25286936 | 2R | 24560853..24560920 | 80..13 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:11:13 has no hits.
BO34553.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:00 Download gff for
BO34553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nurf-38-RC | 138..1007 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:53 Download gff for
BO34553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nurf-38-RC | 138..1007 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:42:53 Download gff for
BO34553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24559623..24559774 | 596..747 | 100 | <- | Minus |
| 2R | 24559422..24559564 | 748..888 | 98 | <- | Minus |
| 2R | 24559830..24560225 | 200..595 | 100 | <- | Minus |
| 2R | 24560292..24560410 | 81..199 | 100 | <- | Minus |
| 2R | 24560853..24560916 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:00 Download gff for
BO34553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20446945..20447087 | 748..888 | 98 | <- | Minus |
| arm_2R | 20447146..20447297 | 596..747 | 100 | <- | Minus |
| arm_2R | 20447353..20447748 | 200..595 | 100 | <- | Minus |
| arm_2R | 20447815..20447933 | 81..199 | 100 | <- | Minus |
| arm_2R | 20448376..20448439 | 17..80 | 100 | | Minus |
BO34553.pep Sequence
Translation from 16 to 904
> BO34553.pep
MALYETVEKGAKNSPSYSLYFKNKCGNVISPMHDIPLYANEEKTIYNMVV
EVPRWTNAKMEISLKTPMNPIKQDIKKGKLRFVANCFPHKGYIWNYGALP
QTWENPDHIEPSTGCKGDNDPIDVIEIGYRVAKRGDVLKVKVLGTIALID
EGETDWKIIAIDVNDPLASKVNDIADVDQYFPGLLRATVEWFKIYKIPDG
KPENQFAFNGDAKNADFANTIIAETHKFWQNLVHQSPASGSISTTNITNR
NSEHVIPKEEAEKILAEAPDGGQVEEVSDTGKVHYIRSNLASFLDH
BO34553.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:51:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nurf-38-PC | 290 | CG4634-PC | 1..290 | 1..290 | 1549 | 100 | Plus |
| Nurf-38-PB | 290 | CG4634-PB | 1..280 | 1..280 | 1496 | 100 | Plus |
| Nurf-38-PA | 338 | CG4634-PA | 49..328 | 1..280 | 1496 | 100 | Plus |
