Clone BO34554 Report

Search the DGRC for BO34554

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:345
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG4116-RB
Protein status:BO34554.pep: Imported from assembly
Sequenced Size:733

Clone Sequence Records

BO34554.complete Sequence

733 bp assembled on 2013-10-29

GenBank Submission: KX796914

> BO34554.complete
GAAGTTATCAGTCGACATGATCTACGCAATTCTAGTGCTCTGTCTGCTGG
GCAGTTGTTGCCCAGCAATGGCCCAGAAGGTCGAAAAGGATCCGCTGGCC
AAGGAACAAAATACCCGTTTGGCCGGCATCTATGTGAAGGATGGCAACGA
AAATGGCCAGCTGAGATTCCTGGCATCGGGCTTGAACAGTGGCAGCAGCA
GCACCAGCTCTTCAAACACCGGTATCAACTCGGCCCTGAATCAGTACATA
ACCAATAAGCAGGATATGCTGGAGCAACTGCGTCCCACTTCGGGCACCAC
ATCAACGGGAACGGGAGCTGTTACGGGCACATCGACGGGAACAACAGGAA
CGACTTCGGGAACCGGAACTGGCCTGGTCACCACGACTTCCAATGGAGCT
ATCTATGTGAACCTGGGCAGTTCGGGATCCTCATCATCATCGTCTTCCTC
CTCGTCGGCCACCAATGCGGCCATTAATCAGGTCATCTATGGATCCTCGC
CAGTTGCCGGTCTCTTGCCGCAGATCGTTGGCCAGGCGGTGTCCAGTCGA
GTGCGTCCCGGTGGCCAGAACAATAGGAGGCGCGTTCCCGCCCGTAGGCG
CCGGGTCAACAAGAGGCGTGGCAGCATTAACAACAACAATCAGCGACGTC
GCCGGCGTGGCAACAAGCGGGGCAAGAATAAGGCCCAGGTGATGGTGGTG
CGACCAAATCGCGGTGCAAGCTTTCTAGACCAT

BO34554.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4116-RB 702 CG4116-PB 1..699 17..715 3495 100 Plus
CG4116-RA 795 CG4116-PA 94..792 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4116-RB 868 CG4116-RB 14..712 17..715 3495 100 Plus
CG4116-RA 948 CG4116-RA 94..792 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3066771..3067469 715..17 3495 100 Minus
Blast to na_te.dros performed 2014-11-28 14:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6840..7049 185..384 134 55.9 Plus

BO34554.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:02 Download gff for BO34554.complete
Subject Subject Range Query Range Percent Splice Strand
CG4116-RA 94..792 17..717 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:55 Download gff for BO34554.complete
Subject Subject Range Query Range Percent Splice Strand
CG4116-RA 94..792 17..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:42:55 Download gff for BO34554.complete
Subject Subject Range Query Range Percent Splice Strand
X 3066768..3067469 17..717 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:02 Download gff for BO34554.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2960801..2961502 17..717 99   Minus

BO34554.pep Sequence

Translation from 16 to 733

> BO34554.pep
MIYAILVLCLLGSCCPAMAQKVEKDPLAKEQNTRLAGIYVKDGNENGQLR
FLASGLNSGSSSTSSSNTGINSALNQYITNKQDMLEQLRPTSGTTSTGTG
AVTGTSTGTTGTTSGTGTGLVTTTSNGAIYVNLGSSGSSSSSSSSSSATN
AAINQVIYGSSPVAGLLPQIVGQAVSSRVRPGGQNNRRRVPARRRRVNKR
RGSINNNNQRRRRRGNKRGKNKAQVMVVRPNRGASFLDH

BO34554.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4116-PB 233 CG4116-PB 1..233 1..233 1167 100 Plus
CG4116-PA 264 CG4116-PA 32..264 1..233 1167 100 Plus
CG13560-PB 181 CG13560-PB 20..181 53..215 176 32.1 Plus
CG13560-PA 181 CG13560-PA 20..181 53..215 176 32.1 Plus