BO34559.complete Sequence
886 bp assembled on 2013-10-29
GenBank Submission: KX800133
> BO34559.complete
GAAGTTATCAGTCGACATGCAGGCGATTGCGTTTCACAAACTGTTACTAC
TGCTTCCGCTGGCGTTTTATCAATCAACAAATGGTATGGAGTGGAATTAC
CTGAAGAATGGCAAGGATTGGGAGGACCTCTGCTCCTCCGGAAAACACCA
ATCGCCGATTTTGTTGGATTCTAGAACGGCGCGCAAGTGGGTCTTACCTG
GGATCACTTTCTGGCATTATTATAGGCTGCTTAAGCGTCCGTTTTACATC
AGAAACAATGGGCACTCCATTAGCTTGGACATTCCCGTGACGAGCAATGG
AAGGAAGCCCTTCATAACCGGCGGCCGTTTGAAGGGTCGTTACTATGCCG
ATGGACTTCACTTCCATTGGGGGTCCTACAAATCCCGCGGATCCGAGCAC
TTGATTAACAAGCGCCGATTCGACGCAGAAATCCATATTGTCCATCGGAA
CGAGAAGTACAGAAATATTGCACAAGCCGTCCGTCAGAAAGATGGTTTGG
CTGTTGTCGCAATCATGGTGGCTATTAAGGACAATGCGAAATCCACACCT
TTGTCCAGGCTCATGGAGGCAGTCGTACGGGTGCCGATCGAAGACTCGAA
CGCCACTGTTTTTGGCCAATCAAGCTTGGATCAGTTGATCGGAGGTGTGA
GTCACAGGGACTTCTTCACCTACGAGGGCTCACTGACCACGCCCCTCTGC
GACGAGACTGTCACCTGGATTGTTTTCACCGAGACTACGACTGTCACCAT
GTCATCCGTCTCAAAGTTTTGGCTGTTGCGAGACCACTGGGGCCACAGGC
TGATCAACAATTATCGGATTGTCCAAGATCTAAACAATCGCACTGTGTTC
TATAAGAAGAGAATGTCAGCAAGCTTTCTAGACCAT
BO34559.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:29:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18672-RB | 855 | CG18672-PB | 1..852 | 17..868 | 4260 | 100 | Plus |
| CG18672-RC | 861 | CG18672-PC | 1..858 | 17..868 | 4165 | 99.3 | Plus |
| CG18672-RD | 846 | CG18672-PD | 1..843 | 17..868 | 4090 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18672-RB | 1036 | CG18672-RB | 161..1012 | 17..868 | 4260 | 100 | Plus |
| CG18672-RC | 1042 | CG18672-RC | 161..1018 | 17..868 | 4165 | 99.3 | Plus |
| CG18672-RD | 1027 | CG18672-RD | 161..1003 | 17..868 | 4090 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31261302..31261643 | 527..868 | 1710 | 100 | Plus |
| 3R | 32079331 | 3R | 31260982..31261238 | 270..526 | 1285 | 100 | Plus |
| 3R | 32079331 | 3R | 31260669..31260765 | 83..179 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 31260829..31260924 | 178..273 | 465 | 99 | Plus |
| 3R | 32079331 | 3R | 31260407..31260476 | 17..86 | 350 | 100 | Plus |
| 3R | 32079331 | 3R | 31259200..31259300 | 359..459 | 205 | 80.2 | Plus |
| 3R | 32079331 | 3R | 10118874..10118949 | 660..735 | 185 | 82.9 | Plus |
| 3R | 32079331 | 3R | 31259784..31259856 | 647..719 | 185 | 83.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:29:20 has no hits.
BO34559.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:24 Download gff for
BO34559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18672-RB | 161..1012 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:15:06 Download gff for
BO34559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18672-RB | 161..1012 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:15:06 Download gff for
BO34559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31260982..31261238 | 270..526 | 100 | -> | Plus |
| 3R | 31261302..31261643 | 527..870 | 99 | | Plus |
| 3R | 31260407..31260473 | 17..83 | 100 | -> | Plus |
| 3R | 31260670..31260764 | 84..178 | 100 | -> | Plus |
| 3R | 31260830..31260920 | 179..269 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:24 Download gff for
BO34559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27086129..27086195 | 17..83 | 100 | -> | Plus |
| arm_3R | 27086392..27086486 | 84..178 | 100 | -> | Plus |
| arm_3R | 27086552..27086642 | 179..269 | 100 | -> | Plus |
| arm_3R | 27086704..27086960 | 270..526 | 100 | -> | Plus |
| arm_3R | 27087024..27087365 | 527..870 | 99 | | Plus |
BO34559.pep Sequence
Translation from 16 to 886
> BO34559.pep
MQAIAFHKLLLLLPLAFYQSTNGMEWNYLKNGKDWEDLCSSGKHQSPILL
DSRTARKWVLPGITFWHYYRLLKRPFYIRNNGHSISLDIPVTSNGRKPFI
TGGRLKGRYYADGLHFHWGSYKSRGSEHLINKRRFDAEIHIVHRNEKYRN
IAQAVRQKDGLAVVAIMVAIKDNAKSTPLSRLMEAVVRVPIEDSNATVFG
QSSLDQLIGGVSHRDFFTYEGSLTTPLCDETVTWIVFTETTTVTMSSVSK
FWLLRDHWGHRLINNYRIVQDLNNRTVFYKKRMSASFLDH
BO34559.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18672-PB | 284 | CG18672-PB | 1..284 | 1..284 | 1514 | 100 | Plus |
| CG18672-PC | 286 | CG18672-PC | 1..286 | 1..284 | 1501 | 99.3 | Plus |
| CG18672-PD | 281 | CG18672-PD | 1..281 | 1..284 | 1488 | 98.9 | Plus |
| CG3669-PB | 298 | CG3669-PB | 1..296 | 1..288 | 765 | 51.7 | Plus |
| CG18673-PC | 302 | CG18673-PC | 42..299 | 25..280 | 557 | 41.9 | Plus |
