BO34560.complete Sequence
844 bp assembled on 2013-10-29
GenBank Submission: KX799273
> BO34560.complete
GAAGTTATCAGTCGACATGCCCATGAATGGACAGGCGGGTGGACAAAATG
GACGCAAGCGTCGGGACAACGAAGATTTCTCGGTGAAGTTATCCACCATC
AGGATCTGGATTCACGAGAAGGACATTGGCAAGTTGACGCGTATTTTATG
GGGTGGCCAGGGCAACAGACTATGCCAACAGGCCAGCAACAATGGTCGAG
TGAAGCGCTTCCTCGCAGCCGTTCCCCATGTCATGAATGCCATCAAAGAT
CTGCACCAGGCGGTCATCGACAACAATCTGGAGACCGTGCAGGCGCAGCT
GGAGCCACCGGTGCCCAGTGCACTGGTCACCTGCAAGGACGGCAATGGCT
TGAACATCATACACAAGGCCGCCGGACTGGGCCACACCAAGCTGCTGGAA
TACCTGGTGGGCATTTGGCCCGAGGGCGCCCATGAGACGGACATTACCGG
AAAGACGCCGCTCCACTGGGCCGCCAGTGCCAAGAACAACATGCGATGCT
ACACACTGCTCACCCAAGCGGGTTGCGACGAGGAGGCCGTCGATTATAAA
ATGAAGACCCCCTCATACTATCGCCACAAGCCGCACGAAATCGAGCGCGC
CTTCCTGGTTTATGTGCCGGATGCACCTCGCGTCTCCCCCGACAGCGCCA
CCGATTGGGACGCCTTGTGCGATGAGAGTGGAGTGGACAACGGAGCGGGG
GGCGATGCCAGCTCCAAGAAACTGGACATCAAGGTGCCGCCTTCTGTGAA
TGGCCGAAAATCGCTGGACGACAGCCTTGAGAACACCTCGGAGCTAGACA
CCAACGACGGAATATTGGAAGAGCTGGCAAGCTTTCTAGACCAT
BO34560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:29:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30271-RF | 813 | CG30271-PF | 1..810 | 17..826 | 4050 | 100 | Plus |
| CG30271-RI | 1506 | CG30271-PI | 64..857 | 17..810 | 3970 | 100 | Plus |
| CG30271-RH | 1464 | CG30271-PH | 22..815 | 17..810 | 3970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30271-RF | 1600 | CG30271-RF | 199..1008 | 17..826 | 4050 | 100 | Plus |
| CG30271-RI | 2185 | CG30271-RI | 281..1074 | 17..810 | 3970 | 100 | Plus |
| CG30271-RH | 1656 | CG30271-RH | 107..900 | 17..810 | 3970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22819641..22819953 | 235..547 | 1565 | 100 | Plus |
| 2R | 25286936 | 2R | 22820159..22820329 | 548..718 | 855 | 100 | Plus |
| 2R | 25286936 | 2R | 22819421..22819583 | 73..235 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 22820385..22820478 | 717..810 | 470 | 100 | Plus |
| 2R | 25286936 | 2R | 22818910..22818967 | 17..74 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:29:24 has no hits.
BO34560.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:25 Download gff for
BO34560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30271-RF | 199..1008 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:15:08 Download gff for
BO34560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30271-RF | 199..1008 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:15:08 Download gff for
BO34560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22820159..22820329 | 548..718 | 100 | -> | Plus |
| 2R | 22820387..22820478 | 719..810 | 100 | -> | Plus |
| 2R | 22818910..22818967 | 17..74 | 100 | -> | Plus |
| 2R | 22819423..22819583 | 75..235 | 100 | -> | Plus |
| 2R | 22819642..22819953 | 236..547 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:25 Download gff for
BO34560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18707664..18707834 | 548..718 | 100 | -> | Plus |
| arm_2R | 18707892..18707983 | 719..810 | 100 | -> | Plus |
| arm_2R | 18706415..18706472 | 17..74 | 100 | -> | Plus |
| arm_2R | 18706928..18707088 | 75..235 | 100 | -> | Plus |
| arm_2R | 18707147..18707458 | 236..547 | 100 | -> | Plus |
BO34560.pep Sequence
Translation from 16 to 844
> BO34560.pep
MPMNGQAGGQNGRKRRDNEDFSVKLSTIRIWIHEKDIGKLTRILWGGQGN
RLCQQASNNGRVKRFLAAVPHVMNAIKDLHQAVIDNNLETVQAQLEPPVP
SALVTCKDGNGLNIIHKAAGLGHTKLLEYLVGIWPEGAHETDITGKTPLH
WAASAKNNMRCYTLLTQAGCDEEAVDYKMKTPSYYRHKPHEIERAFLVYV
PDAPRVSPDSATDWDALCDESGVDNGAGGDASSKKLDIKVPPSVNGRKSL
DDSLENTSELDTNDGILEELASFLDH
BO34560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30271-PF | 270 | CG30271-PF | 1..270 | 1..270 | 1439 | 100 | Plus |
| CG30271-PH | 487 | CG30271-PH | 8..272 | 1..265 | 1417 | 100 | Plus |
| CG30271-PI | 501 | CG30271-PI | 22..286 | 1..265 | 1417 | 100 | Plus |
| CG30271-PG | 501 | CG30271-PG | 22..286 | 1..265 | 1417 | 100 | Plus |
| CG42284-PD | 657 | CG42284-PD | 67..243 | 19..188 | 200 | 29.9 | Plus |
