BO34564.complete Sequence
1960 bp assembled on 2014-07-30
GenBank Submission: KX798613
> BO34564.complete
GAAGTTATCAGTCGACATGCTAGCACAAAAGTCAGTTGCCGGTGCTGATG
AACTTGCGCAAGCCAAAGGAAAATGCGTCCATTGCGCAAACGCAGCGGAA
AGGGTCTGTCAGCGCTGCGGGGACTTTTACTGCTCCAAGCATTGTCAGCG
GCAAGATTGGCTACGTCATCGTTACATCTGCATCCCGCTGCCCGCGTTGG
TTTCTCCCAATGAATATTCCGTGTTCCAGAGCGACAGGGAATCAACTTTG
GAGGGGGCCTGTTCGTTAAACGCTGACAAATCTGTAGTTGAGGCGTCGCC
AATACCCCTCAGCCGTTCACCTATTCTTCCGGATTTGCAGTGCAATAACG
CCGGCCGTTCCAGCATCATTGCAGCCAAAGATGATATTCCCGTTTCTCCG
CCAAAAGCGATCATCCCGCCCAGCGGTGCTATGGTATACATTACGGACTT
CATATCCAGTAATCGTTGCTATATTCGCGATGCCAGCGAATCTGCTGAAA
GAGCGTTTGACGAAGTTTGCAAGAAGGTTAATACCATAGCTACGTTATTG
CCCAGAATAAAAAATCCACCACCAAATAGATTGTGCCTAGTCCACTTTAA
TGGCATGTATGTGCGAGCGAAGATGTGTAAGAAGCTCCGTGAGGTTTCCC
ACTTATTTTTGGTCGATCTTGGAATCAAACATTCTGGACCTTTTTTCGAT
TTTAAGGATATCAATGATGAGTTAAAAGCATTGCCCTGTTCCAGCCAACT
GGTGCAGCTCAAGAATGTATTGAATTGTGACTATTCCAATGATGTCATTG
CCTTCAACTCGAAATTCGTGGGCAAGAAATATATGGCAACCATTAAAAAG
TGCCCTGGATTACACCTCGTGGAACTAGTAAACACGGAGATGAACTTTTC
GGTAAATGAACAGTTAAACGCATTTTTCAACAGTAAGAAGTTGCTACGAA
ACCCTAATTCTGCGGCCGAGAATATCAAGTCATGTTCCTTAGAAGGTCCG
CAACCTTCACATATTGATCAACCCATTGCAATTCCTGCAATCGAATGTAA
GAAAATGTTAACGAAACCAGAGGTACAGAATGAGTGTGAGGAGATACTCA
AGCAACAGAACTCCGGACAAATTGATCAATCAAAATCAACTAATGTACTG
GTTACAGAAGGAGCCTCTAATAAGATGCTTGGCTTTATTGATCTTGCTGA
TAAGGCAACTAAAACTGATCAGGACACTGCACCAAAGCCTAAAGATGAAG
ACGTAAAACATTCCTTAACACAATGCTTAACACCAAAAGCTAATTATCCG
TTACAACTTCCAAACCATAAAAAAAATTTGGAACTTCCCGTTATCCATAA
AACTAATGCCCAAACAAATGGAATCGTAATGTCGAAAAACGAACATGTCC
TAAAACCTCCTTTTGAGATGCGTAGATTTTCAATCGAATCTAAGGAAGGC
ATTGATCTCATCGTTGTGGATAGTACAAAAAAAAATCGAGGTATTTTTGG
GGCCTTTGACAGCACCTACGCCTCCGAATTTTCCGCCTTGCACTCTCGTT
TATCAGAAATTACAGACTGCGAGCCTTATAAGCCAGTTGTCAGGGAATAT
GTGCTTGCCAGATTTGAGGGTTCCTGGTATCGTGGCAAAGTGGAACAGAT
TATAGTTGTTCCACGGCAGCAGACAAAGTACCGGGTAATGTACCTCGATT
ACACGAATGTAGAGGACATAACCGAAATGGATATCCGTCGCTATCCATTA
GACTTCACCGCTCCCTGTGCCACAAACCTTTGCGTGATTGACGAATTCCC
GCACAACCCGAATGCAGCACAGGTTTCCTATCTGGCTGAGGTTTTGAAGG
TCCATCAGTCAGTTCATATTGATAGTATCAAATATATCAACCATATAGCC
GTAATTAAATCGGGAAGTCTTATTCAGAAGCTGTTGAGCTTGGCAAGCTT
TCTAGACCAT
BO34564.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:14:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9684-RA | 1929 | CG9684-PA | 1..1926 | 17..1942 | 9630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9684-RA | 2146 | CG9684-RA | 79..2006 | 15..1942 | 9640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8360800..8361683 | 1408..525 | 4420 | 100 | Minus |
| 3R | 32079331 | 3R | 8361905..8362381 | 529..53 | 2385 | 100 | Minus |
| 3R | 32079331 | 3R | 8360301..8360506 | 1793..1588 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 8360564..8360742 | 1587..1409 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 8360098..8360247 | 1942..1793 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 8362439..8362476 | 52..15 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:14:33 has no hits.
BO34564.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-30 16:06:02 Download gff for
BO34564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9684-RA | 81..2006 | 17..1944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:34:29 Download gff for
BO34564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9684-RA | 81..2006 | 17..1944 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:34:29 Download gff for
BO34564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8360096..8360246 | 1794..1944 | 98 | <- | Minus |
| 3R | 8360301..8360506 | 1588..1793 | 100 | <- | Minus |
| 3R | 8360564..8360742 | 1409..1587 | 100 | <- | Minus |
| 3R | 8360800..8361681 | 527..1408 | 100 | <- | Minus |
| 3R | 8361908..8362381 | 53..526 | 100 | <- | Minus |
| 3R | 8362439..8362474 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-30 16:06:02 Download gff for
BO34564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4186522..4187403 | 527..1408 | 100 | <- | Minus |
| arm_3R | 4187630..4188103 | 53..526 | 100 | <- | Minus |
| arm_3R | 4188161..4188196 | 17..52 | 100 | | Minus |
| arm_3R | 4185818..4185968 | 1794..1944 | 98 | <- | Minus |
| arm_3R | 4186023..4186228 | 1588..1793 | 100 | <- | Minus |
| arm_3R | 4186286..4186464 | 1409..1587 | 100 | <- | Minus |
BO34564.pep Sequence
Translation from 16 to 1960
> BO34564.pep
MLAQKSVAGADELAQAKGKCVHCANAAERVCQRCGDFYCSKHCQRQDWLR
HRYICIPLPALVSPNEYSVFQSDRESTLEGACSLNADKSVVEASPIPLSR
SPILPDLQCNNAGRSSIIAAKDDIPVSPPKAIIPPSGAMVYITDFISSNR
CYIRDASESAERAFDEVCKKVNTIATLLPRIKNPPPNRLCLVHFNGMYVR
AKMCKKLREVSHLFLVDLGIKHSGPFFDFKDINDELKALPCSSQLVQLKN
VLNCDYSNDVIAFNSKFVGKKYMATIKKCPGLHLVELVNTEMNFSVNEQL
NAFFNSKKLLRNPNSAAENIKSCSLEGPQPSHIDQPIAIPAIECKKMLTK
PEVQNECEEILKQQNSGQIDQSKSTNVLVTEGASNKMLGFIDLADKATKT
DQDTAPKPKDEDVKHSLTQCLTPKANYPLQLPNHKKNLELPVIHKTNAQT
NGIVMSKNEHVLKPPFEMRRFSIESKEGIDLIVVDSTKKNRGIFGAFDST
YASEFSALHSRLSEITDCEPYKPVVREYVLARFEGSWYRGKVEQIIVVPR
QQTKYRVMYLDYTNVEDITEMDIRRYPLDFTAPCATNLCVIDEFPHNPNA
AQVSYLAEVLKVHQSVHIDSIKYINHIAVIKSGSLIQKLLSLASFLDH
BO34564.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:10:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9684-PA | 642 | CG9684-PA | 1..642 | 1..642 | 3360 | 100 | Plus |
