Clone BO34568 Report

Search the DGRC for BO34568

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:345
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG11816-RB
Protein status:BO34568.pep: Imported from assembly
Sequenced Size:1120

Clone Sequence Records

BO34568.complete Sequence

1120 bp assembled on 2013-10-29

GenBank Submission: KX796131

> BO34568.complete
GAAGTTATCAGTCGACATGTCATCAAACAGAATCCGGCCGGAGTTGGTAC
TCCTGCAGCTGCTGCTACTGGCGGCCACATTAATCCCTTTGCTGCAGGCC
GGGATAGTTACAGCTCCGTACTCCGAATCGGATTCGGATTTGGATTCGAA
TCCGGACACCACCGCCACCACCATCGCCACCATCGCCACCATCACCACCG
ACAACTACAACCCGCATGCGGAGGAGCTGCAACTGGAATCGGAGACGGAG
GCCACTGCTGCTCAAGTGGATGGCCAACGCATCGACTGCAAATTGACTTT
CGATGCGGCGACAATGGACTCGTTAGGCTGCCACAATGAGGGGGCGTTGC
CGGAGAGGGGGGCGTTACCAGGCAGTGGTAATAAGCCGGTGGAGGAGATG
CCTGAGGCAAATCCAGACTGGCGGCGCCACTTGAAGTCACCGGACAGCCA
GCCCATCTATGAATTACAATTGGTTGTTTGGCCCAGTGACATCGAGGACG
GTGATGACTTCAGTCCACCGCTGTCCACTACAACAACAACAGAAGCAACA
ACAACGACAGCTAGGACCACTAGAGCCACCAGTAGCACCACTAGCATCAC
CCCCAAGCCCACCCAAATTGGGACACCTATTGAGCAAATATGGCCATTGT
ACGAGGATCAATTGGTTGTATTTCCGCAAATGGACTTTGAAGAGGAGAAT
CTTGATTATTTCTTCGACGAAGTGCCACCATCCACATCGTCGACCACCGG
TCGCCCGTTGACCACCAGTCATCCCACCGGCACGCCCACTCCCACGCCCA
TTTATGTTGTGCAAAACTATCACGTTATACACCCCAATGGCACCGAGGAG
TACAAATTGGTGATGAGCAACGGCCTGGTGAACTACAAGAAGCTGTACTC
CAAGAAAGTGGGTGACCGGTTGATCAACGTTCAGGAGGGCTACAATTCAG
TGCCCATTCCAGGACCTAAAAACCAAATCCAGACACAGTACTATATTGCC
GACGAGCGGGGCTACAATGTCTATAGAATCGAGCTCCACTATCACCAGCC
AGGGTTGTTGCCCAAACATTTGCATTACAAAGCCACAAAAGCGACCAATA
TGGCAAGCTTTCTAGACCAT

BO34568.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11816-RB 1089 CG11816-PB 1..1086 17..1102 5430 100 Plus
CG11816-RD 1089 CG11816-PD 1..1086 17..1102 5430 100 Plus
CG11816-RC 1041 CG11816-PC 1..1012 17..1028 5060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11816-RB 1470 CG11816-RB 14..1102 14..1102 5445 100 Plus
CG11816-RD 1958 CG11816-RD 502..1590 14..1102 5445 100 Plus
CG11816-RC 1808 CG11816-RC 502..1516 14..1028 5075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13553411..13554252 855..14 4210 100 Minus
X 23542271 X 13553092..13553264 1028..856 865 100 Minus
X 23542271 X 13552927..13553000 1102..1029 370 100 Minus
Blast to na_te.dros performed 2014-11-28 14:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2407 512..617 164 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2442..2526 528..613 157 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2799..2910 531..644 141 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5629..5675 511..557 127 74.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2385..2468 525..606 127 63.1 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 504..583 519..599 123 63 Plus
roo 9092 roo DM_ROO 9092bp 1124..1160 525..561 122 81.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 3458..3517 1060..1116 121 73.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3592..3624 523..555 111 81.8 Plus

BO34568.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:08 Download gff for BO34568.complete
Subject Subject Range Query Range Percent Splice Strand
CG11816-RD 505..1590 17..1104 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:04 Download gff for BO34568.complete
Subject Subject Range Query Range Percent Splice Strand
CG11816-RD 505..1590 17..1104 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:04 Download gff for BO34568.complete
Subject Subject Range Query Range Percent Splice Strand
X 13552924..13553000 1029..1104 97 <- Minus
X 13553092..13553264 856..1028 100 <- Minus
X 13553411..13554249 17..855 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:08 Download gff for BO34568.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13446957..13447033 1029..1104 97 <- Minus
arm_X 13447125..13447297 856..1028 100 <- Minus
arm_X 13447444..13448282 17..855 100   Minus

BO34568.pep Sequence

Translation from 16 to 1120

> BO34568.pep
MSSNRIRPELVLLQLLLLAATLIPLLQAGIVTAPYSESDSDLDSNPDTTA
TTIATIATITTDNYNPHAEELQLESETEATAAQVDGQRIDCKLTFDAATM
DSLGCHNEGALPERGALPGSGNKPVEEMPEANPDWRRHLKSPDSQPIYEL
QLVVWPSDIEDGDDFSPPLSTTTTTEATTTTARTTRATSSTTSITPKPTQ
IGTPIEQIWPLYEDQLVVFPQMDFEEENLDYFFDEVPPSTSSTTGRPLTT
SHPTGTPTPTPIYVVQNYHVIHPNGTEEYKLVMSNGLVNYKKLYSKKVGD
RLINVQEGYNSVPIPGPKNQIQTQYYIADERGYNVYRIELHYHQPGLLPK
HLHYKATKATNMASFLDH

BO34568.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11816-PB 362 CG11816-PB 1..362 1..362 1911 100 Plus
CG11816-PD 362 CG11816-PD 1..362 1..362 1911 100 Plus
CG11816-PC 346 CG11816-PC 1..339 1..339 1774 99.7 Plus
CG11816-PA 346 CG11816-PA 1..339 1..339 1774 99.7 Plus