BO34571.complete Sequence
1471 bp assembled on 2013-10-29
GenBank Submission: KX794003
> BO34571.complete
GAAGTTATCAGTCGACATGGTAACCACACAGCAGACCAAGGAGATTTGCG
AAATTATTCGGCTGAAATCAACCCAGGTGTTCCTGGTGGCTGGAACATGT
TTGATAACGGTAATGGTTACTTTGCTCTGCATTGGCTTTATGACCAGGTA
CGAGGTGGAGAACGATGTGGCCAACGTGGCGGATGTGGATTATTGGAAGG
ATAAGGTGGCGACCTCCCAGAAAATCTGGTACGATAAGGGCATTGATGAG
CTGAACGAGGCACTAAGGCCACAAGATTTGACTTATCCAAAAAACGTGAG
GATATTTGTGATACAGGGAATCGATGGACGAGACTGGGCTGCTTTTCGAT
TTCCAACCAGCGATGCTAGTCGCGGCAATACCAACTTTATTTGGGATCGG
TTTCCCCACTTGGCTCGCTTGAAAAACAGTTGCAGTCAGCAGTTTCCCTG
TCAAGTGGCCAGTGTTTCCCGAGCTCTTTGGTTGGGAATTCCTTTGGATA
AAGTCCCAGACAATCAGCAGGATTGCGGAAGGTTATTTAATGCAACGCAA
GGCCCGATAAGCATTCTTCGACAGGCACAATTGGCTGGCCTGCGAACTGG
TTTTGTGACCACTCAAAGGATTACTGGACCCACAGGAGCTGCTTTGGGAA
ACGCCAATGGCAACTTTGAATGCGATGAAAGCATGCCGCTGAACTCCATA
AAATCCGGTTGCCAGGATATAGCCCAACAGTTGATCTCTGATGAAACTGG
TAAATTTCTAAATGTACTCATCGGTGGAGGCAGGCAGATGCTGAGCAGTC
TGGTGCCCAACACCAAATATGATCCAGTGGATGAGATGCTCTGCGAGTCC
AACGATGGACGCAACCTGCTAAAGGATTGGAGAAACCAAAAACTTAAGGA
GAGCAAAATTAATCGAATAATATTCGATTTGATTCAGCGAAGGGATGAGC
TGGAGTCCCTAAATTCTAGTAGTTTTGATTATTTAATGGGTGTGATGGCC
AATGGAGATTTGAGTGGTAATTCAAAGGCCCCAAGTCTAAAATTGATGGT
CGATAAGTCTTTGAATGTTCTTACTAAATATAAACAAGGATATCTACTCA
TAGTGGAGCAATTTATACCATCGGGTATTGACAAAAGAGAGCAGTTGCAG
CTTTTGAATGATACTTTGGTTAATCTTCACAAAGATCAGGATACTTTAAC
TCTTGTTTTAATGACCAATGCCATTTATCCAAAACCAAGCCTGGATGTCA
GCGAAGAAACCGAGACAATCAGCCTTCTTCCGGAGATATTTAATGAGGCG
GAATCTGAGATCCAAAAACGACTGCACCAAATGCCATCTGAAAGCTTACT
TTTTGCACAGGGCCCCAAGTCCTCAATTTTTCAAGGTGTTCGAAAAGAAA
CCTTTCTGGCACATGCAATATCCCATGTCCTTAGCAGAAGTAGAGTTCGA
CCTGCAAGCTTTCTAGACCAT
BO34571.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5361-RB | 1440 | CG5361-PB | 1..1437 | 17..1453 | 7185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5361-RB | 1486 | CG5361-RB | 8..1444 | 17..1453 | 7185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10074021..10075366 | 1362..17 | 6730 | 100 | Minus |
| 3R | 32079331 | 3R | 10073863..10073955 | 1453..1361 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:11:56 has no hits.
BO34571.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:11 Download gff for
BO34571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5361-RB | 8..1444 | 17..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:09 Download gff for
BO34571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5361-RB | 8..1444 | 17..1455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:09 Download gff for
BO34571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10074022..10075366 | 17..1361 | 100 | | Minus |
| 3R | 10073861..10073954 | 1362..1455 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:11 Download gff for
BO34571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5899583..5899676 | 1362..1455 | 97 | <- | Minus |
| arm_3R | 5899744..5901088 | 17..1361 | 100 | | Minus |
BO34571.pep Sequence
Translation from 16 to 1471
> BO34571.pep
MVTTQQTKEICEIIRLKSTQVFLVAGTCLITVMVTLLCIGFMTRYEVEND
VANVADVDYWKDKVATSQKIWYDKGIDELNEALRPQDLTYPKNVRIFVIQ
GIDGRDWAAFRFPTSDASRGNTNFIWDRFPHLARLKNSCSQQFPCQVASV
SRALWLGIPLDKVPDNQQDCGRLFNATQGPISILRQAQLAGLRTGFVTTQ
RITGPTGAALGNANGNFECDESMPLNSIKSGCQDIAQQLISDETGKFLNV
LIGGGRQMLSSLVPNTKYDPVDEMLCESNDGRNLLKDWRNQKLKESKINR
IIFDLIQRRDELESLNSSSFDYLMGVMANGDLSGNSKAPSLKLMVDKSLN
VLTKYKQGYLLIVEQFIPSGIDKREQLQLLNDTLVNLHKDQDTLTLVLMT
NAIYPKPSLDVSEETETISLLPEIFNEAESEIQKRLHQMPSESLLFAQGP
KSSIFQGVRKETFLAHAISHVLSRSRVRPASFLDH
BO34571.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5361-PB | 479 | CG5361-PB | 1..479 | 1..479 | 2467 | 100 | Plus |
| CG16771-PE | 596 | CG16771-PE | 61..588 | 19..484 | 520 | 30.2 | Plus |
| CG16771-PD | 596 | CG16771-PD | 61..588 | 19..484 | 520 | 30.2 | Plus |
| CG16771-PC | 596 | CG16771-PC | 61..588 | 19..484 | 520 | 30.2 | Plus |
| CG16771-PB | 596 | CG16771-PB | 61..588 | 19..484 | 520 | 30.2 | Plus |
