Clone BO34573 Report

Search the DGRC for BO34573

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:345
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG1969-RE
Protein status:BO34573.pep: Imported from assembly
Sequenced Size:697

Clone Sequence Records

BO34573.complete Sequence

697 bp assembled on 2013-10-29

GenBank Submission: KX795796

> BO34573.complete
GAAGTTATCAGTCGACATGGAGGAGACATATCTGTACGATCCTAATCTGC
TGCTAAAGCTGGACTTTCATCGCAGTCCCGCCAACTTTAAGCCCTTCATA
TCGGCGGCCAATCCCGGCGAGCCCTGGATGAAAGTGCGTCCTCTCAAGGA
CACCGACTACGATCGTGGATTCCTGCAGCTGCTCTCGCAACTCACCCATG
TCGGCAATGTGAATCGTACGCAGTTCTTGACCCGCTTTTCGCAGATGAAA
GCCAGTGGGGACTACTTTGTCACCGTCATTGAGGACACTCGCAAGAATGA
GATTATTGGAGCTGCATCCTTGGTGATCGAGCGCAAGTTCATCCATAACT
GTGCTGTGCGTGGCCGTCTAGAGGATGTGGTGGTCAATGACACGTATCGC
GGGAAGCAACTGGGAAAACTGATCGTGGTCACCGTATCGCTGCTGGCCGA
GGAACTGGGCTGCTACAAAATGTCGCTGGACTGCAAGGACAAGCTGATCA
AGTTCTATGAGTCGCTGGGCTATGTGGCCATTCCCGGAAACTCCAACTCC
ATGACGATTCGCTACGATGAGGGGCCAACGCTCAAGCGGAATGCTACCTC
AGCCGGCTCCAGTGGAACAGTGGGCGACTCCTGCCAAACTGTGGTTGTAA
TATTACCTTTTAAGAGCACCTTCATCAAGGCAAGCTTTCTAGACCAT

BO34573.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-RE 666 CG1969-PE 1..663 17..679 3315 100 Plus
CG1969-RF 687 CG1969-PF 1..627 17..643 3135 100 Plus
CG1969-RH 648 CG1969-PH 1..627 17..643 3135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-RE 895 CG1969-RE 134..797 16..679 3320 100 Plus
CG1969-RF 1341 CG1969-RF 134..761 16..643 3140 100 Plus
CG1969-RG 1495 CG1969-RG 288..915 16..643 3140 100 Plus
CG1969-RF 1341 CG1969-RF 1157..1195 641..679 195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29741150..29741372 421..643 1115 100 Plus
3R 32079331 3R 29740567..29740778 19..230 1060 100 Plus
3R 32079331 3R 29740840..29740967 231..358 640 100 Plus
3R 32079331 3R 29741028..29741091 358..421 320 100 Plus
3R 32079331 3R 29741768..29741806 641..679 195 100 Plus
Blast to na_te.dros performed on 2014-11-28 14:12:02 has no hits.

BO34573.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:13 Download gff for BO34573.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RE 135..797 17..681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:10 Download gff for BO34573.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RE 135..797 17..681 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:10 Download gff for BO34573.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29740566..29740778 17..230 99 -> Plus
3R 29740840..29740967 231..358 100 -> Plus
3R 29741029..29741090 359..420 100 -> Plus
3R 29741150..29741369 421..640 100 -> Plus
3R 29741768..29741806 641..681 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:13 Download gff for BO34573.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25566288..25566500 17..230 99 -> Plus
arm_3R 25566562..25566689 231..358 100 -> Plus
arm_3R 25566751..25566812 359..420 100 -> Plus
arm_3R 25566872..25567091 421..640 100 -> Plus
arm_3R 25567490..25567528 641..681 95   Plus

BO34573.pep Sequence

Translation from 16 to 697

> BO34573.pep
MEETYLYDPNLLLKLDFHRSPANFKPFISAANPGEPWMKVRPLKDTDYDR
GFLQLLSQLTHVGNVNRTQFLTRFSQMKASGDYFVTVIEDTRKNEIIGAA
SLVIERKFIHNCAVRGRLEDVVVNDTYRGKQLGKLIVVTVSLLAEELGCY
KMSLDCKDKLIKFYESLGYVAIPGNSNSMTIRYDEGPTLKRNATSAGSSG
TVGDSCQTVVVILPFKSTFIKASFLDH

BO34573.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-PE 221 CG1969-PE 1..221 1..221 1142 100 Plus
CG1969-PH 215 CG1969-PH 1..209 1..209 1084 100 Plus
CG1969-PG 215 CG1969-PG 1..209 1..209 1084 100 Plus
CG1969-PB 215 CG1969-PB 1..209 1..209 1084 100 Plus
CG1969-PF 228 CG1969-PF 1..209 1..209 1084 100 Plus