BO34578.complete Sequence
1231 bp assembled on 2013-10-29
GenBank Submission: KX795976
> BO34578.complete
GAAGTTATCAGTCGACATGGACAGCAAGGGTCGAAATGTTATCGTCTGTG
ATAACGGCACTGGGTTCGTTAAGTGCGGATATGCCGGCAGCAATTTCCCC
ACCCACATTTTTCCCTCGATGGTGGGACGACCCATGATTCGGGCGGTCAA
CAAAATCGGCGATATCGAAGTCAAGGATTTACATGTCGATGATCTGATGG
TCGGCGATGAGGCCTCACAGCTGCGATCCCTGCTGGAGGTCTCCTATCCG
ATGGAGAACGGTGTGGTGCGCAACTGGGACGACATGTGCCACGTGTGGGA
CTACACGTTCGGTCCCAAAAAGATGGACATCGATCCGACGAACACAAAAA
TCCTGCTAACCGAGCCGCCCATGAATCCCACAAAGAATCGCGAGAAGATG
ATTGAGGTGATGTTCGAGAAATATGGCTTCGATTCGGCGTACATTGCCAT
CCAGGCCGTGCTGACGCTATATGCCCAGGGTCTGATCTCTGGCGTGGTGA
TCGATTCGGGCGATGGTGTAACGCATATATGTCCCGTCTACGAGGAGTTT
GCCCTGCCCCATCTGACGCGACGATTGGACATTGCCGGTCGGGATATCAC
TCGCTATTTGATTAAGTTACTGTTACTACGTGGCTACGCTTTCAATCATT
CCGCCGACTTCGAAACGGTTCGCATAATGAAGGAGAAGCTCTGCTACATT
GGCTACGACATCGAGATGGAGCAGCGTTTGGCCCTGGAGACGACGGTGCT
GGTGGAATCGTACACGCTACCCGACGGTCGTGTTATCAAGGTCGGTGGCG
AGAGATTTGAGGCGCCAGAGGCTCTGTTCCAGCCGCATTTGATCAACGTC
GAGGGACCGGGCATTGCGGAACTGGCCTTCAACACCATCCAGGCGGCAGA
CATCGACATACGGCCCGAACTCTACAAGCACATAGTTCTGTCCGGCGGCT
CCACCATGTATCCGGGTCTTCCCAGTCGGCTGGAGCGTGAGATCAAACAG
CTGTACCTGGAGCGGGTACTCAAGAACGATACGGAAAAGCTGGCGAAATT
CAAAATACGCATTGAGGATCCACCGCGACGCAAGGATATGGTCTTTATCG
GCGGAGCTGTTCTGGCGGAGGTGACAAAGGATCGCGACGGCTTCTGGATG
TCCAAGCAGGAGTATCAGGAACAGGGTCTCAAAGTATTGCAAAAGCTGCA
AAAGATCAGTCACGCAAGCTTTCTAGACCAT
BO34578.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp2-RC | 1200 | CG9901-PC | 1..1197 | 17..1213 | 5985 | 100 | Plus |
| Arp2-RB | 1185 | CG9901-PB | 1..1182 | 17..1213 | 5725 | 98.7 | Plus |
| Arp2-RA | 1185 | CG9901-PA | 1..1182 | 17..1213 | 5725 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp2-RC | 2217 | CG9901-RC | 560..1757 | 16..1213 | 5990 | 100 | Plus |
| Arp2-RB | 2475 | CG9901-RB | 338..1520 | 16..1213 | 5730 | 98.7 | Plus |
| Arp2-RA | 2219 | CG9901-RA | 577..1759 | 16..1213 | 5730 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:12:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16549478..16549908 | 1045..615 | 2155 | 100 | Minus |
| X | 23542271 | X | 16550246..16550465 | 410..191 | 1100 | 100 | Minus |
| X | 23542271 | X | 16549977..16550188 | 616..405 | 1060 | 100 | Minus |
| X | 23542271 | X | 16549245..16549413 | 1213..1045 | 845 | 100 | Minus |
| X | 23542271 | X | 16552339..16552451 | 176..64 | 565 | 100 | Minus |
| X | 23542271 | X | 16553344..16553392 | 64..16 | 245 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 14:12:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader6 | 4885 | invader6 INVADER6 4885bp | 1215..1270 | 483..428 | 127 | 69.6 | Minus |
BO34578.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:19 Download gff for
BO34578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp2-RC | 561..1757 | 17..1215 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:17 Download gff for
BO34578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp2-RC | 561..1757 | 17..1215 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:17 Download gff for
BO34578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16549977..16550186 | 407..616 | 100 | <- | Minus |
| X | 16550250..16550465 | 191..406 | 100 | <- | Minus |
| X | 16551475..16551489 | 176..190 | 100 | <- | Minus |
| X | 16549243..16549412 | 1046..1215 | 98 | <- | Minus |
| X | 16552340..16552450 | 65..175 | 100 | <- | Minus |
| X | 16553344..16553391 | 17..64 | 100 | | Minus |
| X | 16549478..16549906 | 617..1045 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:19 Download gff for
BO34578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16443276..16443445 | 1046..1215 | 98 | <- | Minus |
| arm_X | 16443511..16443939 | 617..1045 | 100 | <- | Minus |
| arm_X | 16444010..16444219 | 407..616 | 100 | <- | Minus |
| arm_X | 16444283..16444498 | 191..406 | 100 | <- | Minus |
| arm_X | 16445508..16445522 | 176..190 | 100 | <- | Minus |
| arm_X | 16446373..16446483 | 65..175 | 100 | <- | Minus |
| arm_X | 16447377..16447424 | 17..64 | 100 | | Minus |
BO34578.pep Sequence
Translation from 16 to 1231
> BO34578.pep
MDSKGRNVIVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPMIRAVNKIGDI
EVKDLHVDDLMVGDEASQLRSLLEVSYPMENGVVRNWDDMCHVWDYTFGP
KKMDIDPTNTKILLTEPPMNPTKNREKMIEVMFEKYGFDSAYIAIQAVLT
LYAQGLISGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITRYLIK
LLLLRGYAFNHSADFETVRIMKEKLCYIGYDIEMEQRLALETTVLVESYT
LPDGRVIKVGGERFEAPEALFQPHLINVEGPGIAELAFNTIQAADIDIRP
ELYKHIVLSGGSTMYPGLPSRLEREIKQLYLERVLKNDTEKLAKFKIRIE
DPPRRKDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQGLKVLQKLQKISHA
SFLDH
BO34578.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp2-PC | 399 | CG9901-PC | 1..399 | 1..399 | 2081 | 100 | Plus |
| Arp2-PB | 394 | CG9901-PB | 1..394 | 1..399 | 2037 | 98.7 | Plus |
| Arp2-PA | 394 | CG9901-PA | 1..394 | 1..399 | 2037 | 98.7 | Plus |
| Act88F-PA | 376 | CG5178-PA | 9..373 | 9..393 | 910 | 46.8 | Plus |
| Act87E-PC | 376 | CG18290-PC | 9..373 | 9..393 | 908 | 46.2 | Plus |
