BO34583.complete Sequence
1588 bp assembled on 2013-11-20
GenBank Submission: KX799162
> BO34583.complete
GAAGTTATCAGTCGACATGATCTTGCGAACGCCACTCGTTGCCGGCCACC
AGCTGCAGCTGCTCCTGCTGCCCTCCGTCCTGCTCCTCATGCTCCATCTT
CTTCTCTGCGATGCAAAGACGGTCAATCCCGGTGATTCCATGCAGATGCA
GCATCACCAGATGACCGCGGAGCCGGGACTGCCGGAACCCAGGGCCTACA
TGCCGGATGCCCAGCATCTGGACTTTGTCTACCACGATCACGAGGAGCTC
ACAAGATTCCTTAGAGCCACCAGTGCGAGGTACCCCAATCTCACTGCCTT
GTACTCCATCGGAAAATCCATCCAGGGACGTGATCTTTGGGTAATGGTGG
TCAGCTCGTCGCCATATGAGCACATGGTGGGTAAGCCGGATGTGAAGTAC
GTGGGCAATATCCACGGAAACGAGCCAGTCGGCCGGGAGATGCTGCTCCA
CCTCATCCAGTATTTCGTGACCAGCTACAACACGGATCAGTACGTCAAAT
GGCTGCTGGACAACACACGGATTCACATTCTGCCCACAATGAATCCGGAT
GGTTATGCGGTTTCCAAGGAGGGCACATGCGATGGTGGCCAAGGAAGATA
TAATGCCCGTGGATTCGATCTGAATCGCAACTTTCCCGACTATTTCAAGC
AGAACAACAAACGGGGTCAGCCAGAAACGGATTCGGTAAAGGATTGGATA
TCCAAGATTCAGTTCGTGCTCAGTGGAAGCCTGCATGGTGGTGCCCTGGT
GGCCAGTTATCCGTACGACAATACGCCGAACTCCAGTCCTTTGGGCGCAG
TGTTCCAGACCTACTCGGCGGCGCCATCGCTGACGCCCGACGATGATGTG
TTCAAGCACCTGTCCCTGGTCTATGCCCGCAACCATGCCAAGATGTCCAG
GGGCGTCGCCTGCAAGTCAGCGACGCCGGCCTTCGAGAACGGCATCACCA
ACGGAGCCGCCTGGTATCCACTGACCGGCGGAATGCAGGACTACAACTAT
GTGTGGTACGGCTGCATGGAGATTACGCTGGAGATATCCTGCTGCAAGTT
TCCGCCAGCCTACGAGCTCAAGAAGTACTGGGAGGACAATCAGCTGTCAC
TTATCAAATTCCTGGCCGAGGCGCATCGCGGTGTCCAGGGATTCGTGTTC
GATCCGGCGGGCATGCCCATTGAGCGAGCCTCCATCAAGATCAAGGGACG
CGATGTGGGTTTCCAGACCACCAAGTACGGCGAGTTCTGGCGCATACTTC
TGCCGGGCTACTACAAAGTGGAGGTCTTTGCCGAGGGCTTCGCTCCTCGC
GAGGTGGAGTTCGTGATCGTGGAGCAGCATCCCACGCTGCTCAATGTAAC
GCTGCAGCCCTCAAAGCGCTTGGAGGGCATTGGGCCCATGGGTCCCGGCG
GAGTGCCAGTGGGTGGTGTAGTGGGTCCCGGTGGGCTATACCGCCCCATT
CCGTCGCCGCAGCATTACCGCCCACCTGTACCGCCCTACGCGGGCGCCGC
CTCCAGCGATAGTGGCATATTCTCGACCATCAGCAATGGTTTAAACAGCC
TGTACTCAAATATATTCGGCGCAAGCTTTCTAGACCAT
BO34583.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4678-RD | 1557 | CG4678-PD | 1..1554 | 17..1570 | 7770 | 100 | Plus |
| CG4678-RI | 1542 | CG4678-PI | 1..1539 | 17..1570 | 7510 | 99 | Plus |
| CG4678-RJ | 1572 | CG4678-PJ | 1..1569 | 17..1570 | 7480 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4678-RD | 2007 | CG4678-RD | 289..1843 | 16..1570 | 7775 | 100 | Plus |
| CG4678-RI | 1952 | CG4678-RI | 249..1788 | 16..1570 | 7515 | 99 | Plus |
| CG4678-RJ | 1982 | CG4678-RJ | 249..1818 | 16..1570 | 7485 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16708156..16708491 | 262..597 | 1680 | 100 | Plus |
| X | 23542271 | X | 16709359..16709669 | 786..1096 | 1555 | 100 | Plus |
| X | 23542271 | X | 16707686..16707934 | 16..264 | 1245 | 100 | Plus |
| X | 23542271 | X | 16710776..16710981 | 1365..1570 | 1030 | 100 | Plus |
| X | 23542271 | X | 16708549..16708740 | 596..787 | 960 | 100 | Plus |
| X | 23542271 | X | 16709735..16709914 | 1096..1275 | 900 | 100 | Plus |
| X | 23542271 | X | 16709983..16710077 | 1272..1366 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:35:39 has no hits.
BO34583.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-20 11:52:45 Download gff for
BO34583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4678-RD | 290..1843 | 17..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:17:48 Download gff for
BO34583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4678-RD | 290..1843 | 17..1572 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:17:48 Download gff for
BO34583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16707687..16707934 | 17..264 | 100 | -> | Plus |
| X | 16708159..16708491 | 265..597 | 100 | -> | Plus |
| X | 16708551..16708738 | 598..785 | 100 | -> | Plus |
| X | 16709359..16709669 | 786..1096 | 100 | -> | Plus |
| X | 16709736..16709912 | 1097..1273 | 100 | -> | Plus |
| X | 16709985..16710077 | 1274..1366 | 100 | -> | Plus |
| X | 16710778..16710981 | 1367..1572 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-20 11:52:45 Download gff for
BO34583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16602192..16602524 | 265..597 | 100 | -> | Plus |
| arm_X | 16602584..16602771 | 598..785 | 100 | -> | Plus |
| arm_X | 16603392..16603702 | 786..1096 | 100 | -> | Plus |
| arm_X | 16603769..16603945 | 1097..1273 | 100 | -> | Plus |
| arm_X | 16604018..16604110 | 1274..1366 | 100 | -> | Plus |
| arm_X | 16604811..16605014 | 1367..1572 | 99 | | Plus |
| arm_X | 16601720..16601967 | 17..264 | 100 | -> | Plus |
BO34583.pep Sequence
Translation from 16 to 1588
> BO34583.pep
MILRTPLVAGHQLQLLLLPSVLLLMLHLLLCDAKTVNPGDSMQMQHHQMT
AEPGLPEPRAYMPDAQHLDFVYHDHEELTRFLRATSARYPNLTALYSIGK
SIQGRDLWVMVVSSSPYEHMVGKPDVKYVGNIHGNEPVGREMLLHLIQYF
VTSYNTDQYVKWLLDNTRIHILPTMNPDGYAVSKEGTCDGGQGRYNARGF
DLNRNFPDYFKQNNKRGQPETDSVKDWISKIQFVLSGSLHGGALVASYPY
DNTPNSSPLGAVFQTYSAAPSLTPDDDVFKHLSLVYARNHAKMSRGVACK
SATPAFENGITNGAAWYPLTGGMQDYNYVWYGCMEITLEISCCKFPPAYE
LKKYWEDNQLSLIKFLAEAHRGVQGFVFDPAGMPIERASIKIKGRDVGFQ
TTKYGEFWRILLPGYYKVEVFAEGFAPREVEFVIVEQHPTLLNVTLQPSK
RLEGIGPMGPGGVPVGGVVGPGGLYRPIPSPQHYRPPVPPYAGAASSDSG
IFSTISNGLNSLYSNIFGASFLDH
BO34583.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4678-PD | 518 | CG4678-PD | 1..518 | 1..518 | 2788 | 100 | Plus |
| CG4678-PJ | 523 | CG4678-PJ | 1..523 | 1..518 | 2752 | 98.5 | Plus |
| CG4678-PE | 527 | CG4678-PE | 1..527 | 1..518 | 2748 | 97.7 | Plus |
| CG4678-PI | 513 | CG4678-PI | 1..513 | 1..518 | 2744 | 98.8 | Plus |
| CG4678-PF | 479 | CG4678-PF | 1..456 | 1..456 | 2425 | 99.1 | Plus |
