Clone BO34588 Report

Search the DGRC for BO34588

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:345
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptAPC4-RA
Protein status:BO34588.pep: Imported from assembly
Sequenced Size:2359

Clone Sequence Records

BO34588.complete Sequence

2359 bp assembled on 2014-03-03

GenBank Submission: KX799343

> BO34588.complete
GAAGTTATCAGTCGACATGGCACAAACGAGCTCCATGAAGTTGCTGGGCG
CCCGCAACATGTCCTGCATTGTGGAGCGTATGGAGTGGAACAACAAGATG
GATCTAATTGCCTACGGAACGGAAAAGGGTGAGGTGGTCATCCAGCGTCT
GAACTGGCAAAAGATTGTCACCTTTCCCACGCCCGGCGAGGATGTGCGGG
TGCGTTCGCTCAGCTGGCAAATGGACGAGACACTCCTGGCGGTTGGCTAC
AGCAACGGCAAGGTGGCGCTCCTGGACGCCGAGAGCGGAACGATAATATC
AGGCCTCATTTACGAGGACGACATCAAGAAGGTCTACTTCAGCAAGGCCA
TCAACTCGCAGGAGAACCTAGGAACTTACACATGTAATGTCAAGGATAAA
CACCGAAGGTTCCTGCCCAAACTGCAGCCAATGACCAATATTGATCCGTG
CCTGAAAACCCTGGACCAAAAGTCCTTTCCAAAGGGATCACCTTGCTTTC
TGGTGGTGATAATGCGCAGCGGCAAAGTGCACCTACTGCTCCTAGGAGCC
CTGCAGGCGGGCAGCATCGATCTCACACAGCACATTCTGCATCCGCACGA
GTTCGATGTGTACGATGTGAGGATGAACGGAGACTGTAATGCCATTTATG
CTCTTTTGCGGGACGGTCAGGAGCTGATATTGCTGCACTTTCAAAACCAG
GTGCTGCAGGATTGCATGGCACCCATGCTGGAGCTGGCAACGCATTGTGC
CCACATCCTAGAAACCAAAAACTATATTAATGACACGCAACAATGTTTGA
CGGAGGCCTGGGAGACCGTGCAGTTGGAAATGGACAATAAGCTAACCAGG
TACGCCAATTCCCAGCCGTACGGAGTGATATCTGCCCATTTTCTGGAGCT
GCACGTCTTTGGATTCGCTACCTTCGAGGTAGAGGAGTTTTTGTTCGAGA
CTCTTTCCGAGAAGGGTTTCAAGAAGATTGCCAACTCGGTGGACCTTAGT
TTAAGCAATCTGCAGAGCTTAGTTTTCAAGCAACTGAATGGAGCAGCCAT
CAACATGTTCTATTTCCTCAACACAATCGCGGGTTTCGGTCGCATGTCGC
ACTTTTTTGAGTCCCTAATCTCTCCGGATGTGGCCAACGAAGCGATGCGA
GCCTGTGGAGGATTTGTGCTCAAAGTACACGAGCTGCAGCGAACAATCGA
CACGTTGGCGTACGACATGAAGCTCTTTCACGCCTGGATGATATTCACAA
TACTACGGCTGTCGCATCAGGAGATTCCCGATGACCTGGTGCTCACCGAG
GAGGAGAACATTGCCATGGCCGACTTCATCTGCGCCATGGAACCGGAATT
GGACGATCGCAGCGATGATGAGGATGAACTGGATTCGCAATCCCAAACGC
CACCGCCTGCGCGCAGCAAATTCAATTTGGAACGAGTGGGCCAGTATCTG
GACAATGCCTACCTCACACAGCTCTATCCCAGGGATCCAGTCCAGCTGTG
GGAGGAGATGGTAACCGACAACGAATGCCTAAGCAACTGCAAACTTTTTG
TGCCCCACGACGTGAACCTGTCGCTTGTGCAGCAGCGCGACAAGATGTTC
AATGCCATCGATGCCGTGTTCCATAAGCCAACGGAGAGCATAAGCGGAAG
TTTCAAGGTCTCCTCGACGGTGATATGCAACGACCTGCCGCCCATGGAGC
CCGGCGAGGACCATAGGGACAGGGATCTCGTCACCTGCACCTATTACGTT
AACGAAGCGTCCAGGACCGACATGTTGGCCTGCACCATCAGCGGGCAGGA
GGCCATGATACTCGAGTTTAGTCGAGCGGGCGATGAATGCGTGCGCTGCA
CTAGAATTACACTGGAGCCAGGATTATTTACAACATCCGTGTCCGAAGAT
TTCTGTTACCTACGCTTCGTCGACCTGCAGTTCTACAATGAATCTTCGCT
ATCGATACTGGCCCAGTCCATAAATGCGGGACCTGGCATGCGACCGCATA
GCTTCTTTATACAATTCTCACTGACCGCGGCGCTGAATTACAGCACACAG
CACCGAATGGGACCGTTGGTCAAGCTGAGCGAAGCCACCGTGTCGCAAAG
CATCCATGACATTGCCGATGGTGCCGCCTTCAAGGGACTGGACGGATTTA
GCGACATGTTGGCCGTCTCGGGCAGCAGGAAGGTGGCCACCGTTCTCTCC
GATCGCAAGCGCAAGATGACCATTTTTGAGATGGAAATCGAGGAGGAGGA
GGATGACACGGAAATGTCCCAGGCCTCGTTTCTGGACATCAGCAAAGAGT
CTGTGCTGGCTGGCGTTCCCGATGCGGAGAAACAGGAGGCGGCAAGCTTT
CTAGACCAT

BO34588.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
APC4-RA 2328 CG32707-PA 1..2325 17..2341 11610 100 Plus
APC4-RC 2322 CG32707-PC 1..2319 17..2341 11485 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
APC4-RA 2617 CG32707-RA 124..2448 17..2341 11610 100 Plus
APC4-RC 2605 CG32707-RC 118..2436 17..2341 11485 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9084467..9085698 1110..2341 6145 99.9 Plus
X 23542271 X 9083538..9083941 368..771 2020 100 Plus
X 23542271 X 9083240..9083484 128..372 1225 100 Plus
X 23542271 X 9083999..9084176 772..949 890 100 Plus
X 23542271 X 9084237..9084399 949..1111 815 100 Plus
X 23542271 X 9083054..9083170 17..133 585 100 Plus
Blast to na_te.dros performed on 2014-11-28 14:57:30 has no hits.

BO34588.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:23:14 Download gff for BO34588.complete
Subject Subject Range Query Range Percent Splice Strand
APC4-RA 124..2448 17..2343 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:27:49 Download gff for BO34588.complete
Subject Subject Range Query Range Percent Splice Strand
APC4-RA 124..2448 17..2343 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:27:49 Download gff for BO34588.complete
Subject Subject Range Query Range Percent Splice Strand
X 9083241..9083483 129..371 100 -> Plus
X 9083542..9083941 372..771 100 -> Plus
X 9083999..9084175 772..948 100 -> Plus
X 9084237..9084399 949..1111 100 -> Plus
X 9083054..9083165 17..128 100 -> Plus
X 9084469..9085698 1112..2343 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:23:14 Download gff for BO34588.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8977087..8977198 17..128 100 -> Plus
arm_X 8977274..8977516 129..371 100 -> Plus
arm_X 8977575..8977974 372..771 100 -> Plus
arm_X 8978032..8978208 772..948 100 -> Plus
arm_X 8978270..8978432 949..1111 100 -> Plus
arm_X 8978502..8979731 1112..2343 99   Plus

BO34588.pep Sequence

Translation from 16 to 2359

> BO34588.pep
MAQTSSMKLLGARNMSCIVERMEWNNKMDLIAYGTEKGEVVIQRLNWQKI
VTFPTPGEDVRVRSLSWQMDETLLAVGYSNGKVALLDAESGTIISGLIYE
DDIKKVYFSKAINSQENLGTYTCNVKDKHRRFLPKLQPMTNIDPCLKTLD
QKSFPKGSPCFLVVIMRSGKVHLLLLGALQAGSIDLTQHILHPHEFDVYD
VRMNGDCNAIYALLRDGQELILLHFQNQVLQDCMAPMLELATHCAHILET
KNYINDTQQCLTEAWETVQLEMDNKLTRYANSQPYGVISAHFLELHVFGF
ATFEVEEFLFETLSEKGFKKIANSVDLSLSNLQSLVFKQLNGAAINMFYF
LNTIAGFGRMSHFFESLISPDVANEAMRACGGFVLKVHELQRTIDTLAYD
MKLFHAWMIFTILRLSHQEIPDDLVLTEEENIAMADFICAMEPELDDRSD
DEDELDSQSQTPPPARSKFNLERVGQYLDNAYLTQLYPRDPVQLWEEMVT
DNECLSNCKLFVPHDVNLSLVQQRDKMFNAIDAVFHKPTESISGSFKVSS
TVICNDLPPMEPGEDHRDRDLVTCTYYVNEASRTDMLACTISGQEAMILE
FSRAGDECVRCTRITLEPGLFTTSVSEDFCYLRFVDLQFYNESSLSILAQ
SINAGPGMRPHSFFIQFSLTAALNYSTQHRMGPLVKLSEATVSQSIHDIA
DGAAFKGLDGFSDMLAVSGSRKVATVLSDRKRKMTIFEMEIEEEEDDTEM
SQASFLDISKESVLAGVPDAEKQEAASFLDH

BO34588.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
APC4-PA 775 CG32707-PA 1..775 1..775 4020 100 Plus
APC4-PC 773 CG32707-PC 1..773 1..775 3996 99.7 Plus