BO34589.complete Sequence
886 bp assembled on 2013-10-29
GenBank Submission: KX795686
> BO34589.complete
GAAGTTATCAGTCGACATGGCCGTCATGGCTTGGCTAGCAAGGCTCGCAC
TTTTCTACACGGCAACCTTCCTTCTGGCAGGAGCCTCTGGCGAGGATGGA
AAAATCGTCAACGGCACTACAGCTGGCCCGGGGGAGTTTCCCTTTGTGGT
CTCGCTGCGACGCGCGAAGAGCGGACGTCACTCCTGCGGCGCTACGCTGC
TCAACCCGTACTGGGTCCTGACAGCCGCCCACTGCGTGCGAGGCTCCTCG
CCAGAGCAGCTCGACCTGCAGTACGGCAGCCAGATGCTGGCGCGAAACTC
CAGCCAGGTGGCCCGCGTGGCCGCCATCTTCGTCCATCCAGGGTACGAGC
CGGAGGACAAGTACGTCAACGACATCGCATTGTTGCAGTTAGCGCAGTCC
GTCGCTTTGAGCAAGTTTGTCCAGCCGGTGCGTCTGCCGGAGCCTCGACA
AGTCACGCCCGGAAACGCCAGTGCTGTCCTCGCGGGCTGGGGATTAAATG
CGACGGGCGGCGTGGTCCAGCAGCATCTGCAGAAGGTCAAACTGCAAGTG
TTCAGCGATACCGAGTGCAGCGAGCGCCATCAGACCTATCTGCACGACAG
CCAGATCTGTGCGGGATTGCCCGAAGGTGGAAAAGGCCAGTGCAGCGGCG
ACTCCGGAGGCCCGCTGCTTCTTATTGGCTCCGACACCCAGGTGGGCATT
GTTTCTTGGAGCATAAAGCCCTGTGCACGGCCACCGTTTCCGGGCGTCTT
CACCGAGGTGTCGGCCTACGTGGACTGGATTGTAGAGACGGTAAATAGCT
ATTCGCCCCCGTCGTCGCTTTGGGTGGGCCAGCTGATTGTGGGACGATCC
CCGCCTAGCCTAAGCAGCGCAAGCTTTCTAGACCAT
BO34589.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32808-RA | 855 | CG32808-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32808-RA | 1063 | CG32808-RA | 172..1023 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1469161..1469646 | 502..17 | 2430 | 100 | Minus |
| X | 23542271 | X | 1468733..1469099 | 868..502 | 1835 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:11:29 has no hits.
BO34589.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:05 Download gff for
BO34589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32808-RA | 172..1023 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:00 Download gff for
BO34589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32808-RA | 172..1023 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:00 Download gff for
BO34589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1468731..1469098 | 503..870 | 99 | <- | Minus |
| X | 1469161..1469646 | 17..502 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:05 Download gff for
BO34589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1362764..1363131 | 503..870 | 99 | <- | Minus |
| arm_X | 1363194..1363679 | 17..502 | 100 | | Minus |
BO34589.pep Sequence
Translation from 16 to 886
> BO34589.pep
MAVMAWLARLALFYTATFLLAGASGEDGKIVNGTTAGPGEFPFVVSLRRA
KSGRHSCGATLLNPYWVLTAAHCVRGSSPEQLDLQYGSQMLARNSSQVAR
VAAIFVHPGYEPEDKYVNDIALLQLAQSVALSKFVQPVRLPEPRQVTPGN
ASAVLAGWGLNATGGVVQQHLQKVKLQVFSDTECSERHQTYLHDSQICAG
LPEGGKGQCSGDSGGPLLLIGSDTQVGIVSWSIKPCARPPFPGVFTEVSA
YVDWIVETVNSYSPPSSLWVGQLIVGRSPPSLSSASFLDH
BO34589.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32808-PA | 284 | CG32808-PA | 1..284 | 1..284 | 1486 | 100 | Plus |
| CG16749-PA | 265 | CG16749-PA | 9..257 | 7..255 | 560 | 47.2 | Plus |
| CG12951-PA | 265 | CG12951-PA | 29..257 | 29..255 | 499 | 44.8 | Plus |
| CG8299-PA | 260 | CG8299-PA | 4..259 | 9..262 | 378 | 35.1 | Plus |
| CG4914-PA | 374 | CG4914-PA | 120..362 | 22..257 | 365 | 36.5 | Plus |
