BO34590.complete Sequence
2560 bp assembled on 2014-03-03
GenBank Submission: KX796827
> BO34590.complete
GAAGTTATCAGTCGACATGAATAATGTACCACATAAGTTTCGTCAAGTTT
GTCGATTGTGCCTCACATTGGTTAACGAGTGCGATGTTGCAGTACTACAG
ATTTACGATAATTCGTCGCATAATAATAGTGCCCCAGACAGAATATCGGC
CGATTTTCGTGGCGTCGCGAATCGTGCCAACTGCTTTTGCAGCGCTTTAA
GCCCCAATCCGTGCAGTTGCATCGTTGATAACCCGCTATCAGCCAACAAA
AATGAACGGCGCAACCAGGGAACACCCGTACCCGTGCCCATACCCATACC
CGTTTCCGTGCCTGTGCCCGTTCCAAGCCAGCAGATCCAATCGCAAACCC
TTCACCATCACCAAAACCAAACTAAAATCCATTACACGCCAAGTGTGCCT
TCTGCTGCGGACGCAAAGTCGAGTGAGCGCGAACGCCAATGCCAATTGGA
GTCGGACATCGCCGAGAGATCAACAGTATTCAAAAGTCAGTCATCGTCGG
ATCACGAACATATAGAATATAGCGGGGAGACGCCATCCCCCTCCGCATCG
CTATCCCAATCCCAAACAAAATCGGAGCCAATGCGCGAGGAGGAGGAACA
TCAGCATAATCATAATCAGCAGAGCGGACGCGAAGAGACAAGTGTGAATA
CAACAAATATAAGCGGAACCGATAACTACGGCAAAGAGCACGGTCGGGAT
GATTCATCATCACCACATCTTACATTTCAGATATTCAACTGTCTCTCTAT
TAAGGCACTGCCCAACGATGGATTACCCAACGTGGTTTGTGGCGACTGCA
GACAAAAATTGGATTCCTTCGAAAAATTTCGAACCATGGCGCACAATTCA
CAAATAGCTTTGAAAGAATTTTTAAATATATCCAAAAATCTGAGACCAGA
CCCAAATGATTTGGAAACCAAGCTCGATGCAATTTTAAAGGCTTCATCGG
AGGCTATAGCGGCAAAGGCTCTGACGGAGTTAAGCACGTTCTCTAAAGTT
AAGTACGACCACAGTAAATTGGATTCCAGCATCCAACCCGGCTTGGATCG
GAAAATCGAGATTAGCAATCAAGAAATGCCAGCACATAGCTTATATCCAA
GTTTATTCAAATCAATTACTATGAAAAGCGATCAAAAGAGCAAAGCAATG
TCTGGATCCTCACACAGCCAGTTTGATTCAAAACTGCAAAAGGACTCGGA
TATCGAGAAATATGAAAATCTGCAGCAGCAGCTTGAAACGGCTGCCGTTT
TAATGGATATAAGCAAAAAAATAGTAATTTCCCCTCCATGTTCGAATCCG
CAATCTCCGTGTTTTTCTGCAGCTGTAGATACAAGTATTAAAAGTTCTGT
GATAAAATCAAAACGTCCATCAAACCAAAATGAAATTCAGGACGGTGTTG
AAATTGACCTATCCGTCAAAAAACAAAAGAACGATTACTCTAATCAACGG
AACGCGGCCCCAATACACCATTTTTGCCAAACTCCAATGCTTGATATTCA
GTCACACTTAAGAAGTGAAGAGGATTTTCAAAACTACAGTATTACCATTA
ACCAAGTTGGTGGGTCCGACTTCAAATCAAAAGCACCCAAGGCGAGTACC
GGCTCCTTGCTAGACTCTGGCGATAGTTCCGACTCTCACAAACTAGAGAT
GGACATCACGTCCTCCATAAATGATAGAAAGACTCCGGATAGCTTAAGCT
CGGATCACGCCACAGATGCGGCAACTACTCAACTCTGGCAGGCACTGGCC
AGATCAGCCGCTAAAAGCAAGGAGGACAATCCGGCATCACAAATATTTCG
AAATATGATGAGCCAGCCTTTCGCGTTTCCGGTTCCGTCGACAGTATCAT
TTACAAAAGTACCTGAAGAACCCATAGCACTATTAAAGGATCTATCAGAG
GCTCAATCCAGCAAATCAAAACCATGTAGAAGAAAACAAAGTTTTCCTAC
CAAAACTGATTGCATCGATGTAGTTAATGAGAATGTGACTGATACTTATA
CCACTTCAGAAGCAACTCCGGATGATAAGAAAGATAAAAGGAACATAAAC
CTTTTTAATGCCATACCTGGTGCTCAAAAAGATATGTCATGTTCGAATTG
TGGCACCCTCACCACAACAATTTGGCGGCGAAGTGTTCGAGGAGAGATGG
TGTGCAACGCCTGCGGATTGTACTTCAAGCTGCATGGGGTCAACAGGCCG
CATTCAATGAGACGCGATACCATACACACCAGACGCAGGCGTCCTAAAGA
ATTGGAGCGATCTAAAAAGAAACACAAACAAATGTCATCATGTTCTTCAA
TAGAAACAACGAAGCAAGATTTCTTGACGGCTAGGGAATCTCTAGCCATT
TCGGGCCTTGTTTTAAATAAATTCAAAAAGGAAATTGATGATACCGAGAC
CCCAGCCGCAGCAGCACTTAAAGATATTTTATCAAGGCGTAAGAAGTCAA
ATTCTTTGCCGGCGTTTAATGATACCTGTGAAAGTGCGGATCTATCCGCA
CCGCTTAACCTTGTTTCCAGTGAAAATAATGCAAAGTTAACAGCAAGCTT
TCTAGACCAT
BO34590.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:57:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GATAd-RC | 2529 | CG5034-PC | 1..2526 | 17..2542 | 12630 | 100 | Plus |
GATAd-RB | 2529 | CG5034-PB | 1..2526 | 17..2542 | 12630 | 100 | Plus |
GATAd-RA | 2529 | CG5034-PA | 1..2526 | 17..2542 | 12630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GATAd-RC | 3467 | CG5034-RC | 162..2687 | 17..2542 | 12630 | 100 | Plus |
GATAd-RB | 2903 | CG5034-RB | 342..2867 | 17..2542 | 12630 | 100 | Plus |
GATAd-RA | 2723 | CG5034-RA | 162..2687 | 17..2542 | 12630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:57:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10336022..10336883 | 899..1760 | 4310 | 100 | Plus |
2L | 23513712 | 2L | 10334075..10334813 | 17..755 | 3695 | 100 | Plus |
2L | 23513712 | 2L | 10337367..10337596 | 2041..2270 | 1150 | 100 | Plus |
2L | 23513712 | 2L | 10338232..10338405 | 2369..2542 | 870 | 100 | Plus |
2L | 23513712 | 2L | 10337139..10337293 | 1887..2041 | 775 | 100 | Plus |
2L | 23513712 | 2L | 10335779..10335925 | 753..899 | 735 | 100 | Plus |
2L | 23513712 | 2L | 10336944..10337073 | 1760..1889 | 650 | 100 | Plus |
2L | 23513712 | 2L | 10338019..10338116 | 2271..2368 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:57:34 has no hits.
BO34590.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:23:17 Download gff for
BO34590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GATAd-RA | 162..2687 | 17..2544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:27:51 Download gff for
BO34590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GATAd-RA | 162..2687 | 17..2544 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:27:51 Download gff for
BO34590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10338019..10338116 | 2271..2368 | 100 | -> | Plus |
2L | 10337141..10337293 | 1889..2041 | 100 | -> | Plus |
2L | 10337368..10337596 | 2042..2270 | 100 | -> | Plus |
2L | 10334075..10334812 | 17..754 | 100 | -> | Plus |
2L | 10335781..10335924 | 755..898 | 100 | -> | Plus |
2L | 10336022..10336883 | 899..1760 | 100 | -> | Plus |
2L | 10336945..10337072 | 1761..1888 | 100 | -> | Plus |
2L | 10338232..10338405 | 2369..2544 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:23:17 Download gff for
BO34590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10334075..10334812 | 17..754 | 100 | -> | Plus |
arm_2L | 10335781..10335924 | 755..898 | 100 | -> | Plus |
arm_2L | 10336022..10336883 | 899..1760 | 100 | -> | Plus |
arm_2L | 10336945..10337072 | 1761..1888 | 100 | -> | Plus |
arm_2L | 10337141..10337293 | 1889..2041 | 100 | -> | Plus |
arm_2L | 10337368..10337596 | 2042..2270 | 100 | -> | Plus |
arm_2L | 10338019..10338116 | 2271..2368 | 100 | -> | Plus |
arm_2L | 10338232..10338405 | 2369..2544 | 98 | | Plus |
BO34590.pep Sequence
Translation from 16 to 2560
> BO34590.pep
MNNVPHKFRQVCRLCLTLVNECDVAVLQIYDNSSHNNSAPDRISADFRGV
ANRANCFCSALSPNPCSCIVDNPLSANKNERRNQGTPVPVPIPIPVSVPV
PVPSQQIQSQTLHHHQNQTKIHYTPSVPSAADAKSSERERQCQLESDIAE
RSTVFKSQSSSDHEHIEYSGETPSPSASLSQSQTKSEPMREEEEHQHNHN
QQSGREETSVNTTNISGTDNYGKEHGRDDSSSPHLTFQIFNCLSIKALPN
DGLPNVVCGDCRQKLDSFEKFRTMAHNSQIALKEFLNISKNLRPDPNDLE
TKLDAILKASSEAIAAKALTELSTFSKVKYDHSKLDSSIQPGLDRKIEIS
NQEMPAHSLYPSLFKSITMKSDQKSKAMSGSSHSQFDSKLQKDSDIEKYE
NLQQQLETAAVLMDISKKIVISPPCSNPQSPCFSAAVDTSIKSSVIKSKR
PSNQNEIQDGVEIDLSVKKQKNDYSNQRNAAPIHHFCQTPMLDIQSHLRS
EEDFQNYSITINQVGGSDFKSKAPKASTGSLLDSGDSSDSHKLEMDITSS
INDRKTPDSLSSDHATDAATTQLWQALARSAAKSKEDNPASQIFRNMMSQ
PFAFPVPSTVSFTKVPEEPIALLKDLSEAQSSKSKPCRRKQSFPTKTDCI
DVVNENVTDTYTTSEATPDDKKDKRNINLFNAIPGAQKDMSCSNCGTLTT
TIWRRSVRGEMVCNACGLYFKLHGVNRPHSMRRDTIHTRRRRPKELERSK
KKHKQMSSCSSIETTKQDFLTARESLAISGLVLNKFKKEIDDTETPAAAA
LKDILSRRKKSNSLPAFNDTCESADLSAPLNLVSSENNAKLTASFLDH
BO34590.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GATAd-PC | 842 | CG5034-PC | 1..842 | 1..842 | 4356 | 100 | Plus |
GATAd-PB | 842 | CG5034-PB | 1..842 | 1..842 | 4356 | 100 | Plus |
GATAd-PA | 842 | CG5034-PA | 1..842 | 1..842 | 4356 | 100 | Plus |
pnr-PD | 488 | CG3978-PD | 156..227 | 674..745 | 228 | 56.9 | Plus |
pnr-PB | 488 | CG3978-PB | 156..227 | 674..745 | 228 | 56.9 | Plus |