Clone BO34590 Report

Search the DGRC for BO34590

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:345
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptGATAd-RA
Protein status:BO34590.pep: Imported from assembly
Sequenced Size:2560

Clone Sequence Records

BO34590.complete Sequence

2560 bp assembled on 2014-03-03

GenBank Submission: KX796827

> BO34590.complete
GAAGTTATCAGTCGACATGAATAATGTACCACATAAGTTTCGTCAAGTTT
GTCGATTGTGCCTCACATTGGTTAACGAGTGCGATGTTGCAGTACTACAG
ATTTACGATAATTCGTCGCATAATAATAGTGCCCCAGACAGAATATCGGC
CGATTTTCGTGGCGTCGCGAATCGTGCCAACTGCTTTTGCAGCGCTTTAA
GCCCCAATCCGTGCAGTTGCATCGTTGATAACCCGCTATCAGCCAACAAA
AATGAACGGCGCAACCAGGGAACACCCGTACCCGTGCCCATACCCATACC
CGTTTCCGTGCCTGTGCCCGTTCCAAGCCAGCAGATCCAATCGCAAACCC
TTCACCATCACCAAAACCAAACTAAAATCCATTACACGCCAAGTGTGCCT
TCTGCTGCGGACGCAAAGTCGAGTGAGCGCGAACGCCAATGCCAATTGGA
GTCGGACATCGCCGAGAGATCAACAGTATTCAAAAGTCAGTCATCGTCGG
ATCACGAACATATAGAATATAGCGGGGAGACGCCATCCCCCTCCGCATCG
CTATCCCAATCCCAAACAAAATCGGAGCCAATGCGCGAGGAGGAGGAACA
TCAGCATAATCATAATCAGCAGAGCGGACGCGAAGAGACAAGTGTGAATA
CAACAAATATAAGCGGAACCGATAACTACGGCAAAGAGCACGGTCGGGAT
GATTCATCATCACCACATCTTACATTTCAGATATTCAACTGTCTCTCTAT
TAAGGCACTGCCCAACGATGGATTACCCAACGTGGTTTGTGGCGACTGCA
GACAAAAATTGGATTCCTTCGAAAAATTTCGAACCATGGCGCACAATTCA
CAAATAGCTTTGAAAGAATTTTTAAATATATCCAAAAATCTGAGACCAGA
CCCAAATGATTTGGAAACCAAGCTCGATGCAATTTTAAAGGCTTCATCGG
AGGCTATAGCGGCAAAGGCTCTGACGGAGTTAAGCACGTTCTCTAAAGTT
AAGTACGACCACAGTAAATTGGATTCCAGCATCCAACCCGGCTTGGATCG
GAAAATCGAGATTAGCAATCAAGAAATGCCAGCACATAGCTTATATCCAA
GTTTATTCAAATCAATTACTATGAAAAGCGATCAAAAGAGCAAAGCAATG
TCTGGATCCTCACACAGCCAGTTTGATTCAAAACTGCAAAAGGACTCGGA
TATCGAGAAATATGAAAATCTGCAGCAGCAGCTTGAAACGGCTGCCGTTT
TAATGGATATAAGCAAAAAAATAGTAATTTCCCCTCCATGTTCGAATCCG
CAATCTCCGTGTTTTTCTGCAGCTGTAGATACAAGTATTAAAAGTTCTGT
GATAAAATCAAAACGTCCATCAAACCAAAATGAAATTCAGGACGGTGTTG
AAATTGACCTATCCGTCAAAAAACAAAAGAACGATTACTCTAATCAACGG
AACGCGGCCCCAATACACCATTTTTGCCAAACTCCAATGCTTGATATTCA
GTCACACTTAAGAAGTGAAGAGGATTTTCAAAACTACAGTATTACCATTA
ACCAAGTTGGTGGGTCCGACTTCAAATCAAAAGCACCCAAGGCGAGTACC
GGCTCCTTGCTAGACTCTGGCGATAGTTCCGACTCTCACAAACTAGAGAT
GGACATCACGTCCTCCATAAATGATAGAAAGACTCCGGATAGCTTAAGCT
CGGATCACGCCACAGATGCGGCAACTACTCAACTCTGGCAGGCACTGGCC
AGATCAGCCGCTAAAAGCAAGGAGGACAATCCGGCATCACAAATATTTCG
AAATATGATGAGCCAGCCTTTCGCGTTTCCGGTTCCGTCGACAGTATCAT
TTACAAAAGTACCTGAAGAACCCATAGCACTATTAAAGGATCTATCAGAG
GCTCAATCCAGCAAATCAAAACCATGTAGAAGAAAACAAAGTTTTCCTAC
CAAAACTGATTGCATCGATGTAGTTAATGAGAATGTGACTGATACTTATA
CCACTTCAGAAGCAACTCCGGATGATAAGAAAGATAAAAGGAACATAAAC
CTTTTTAATGCCATACCTGGTGCTCAAAAAGATATGTCATGTTCGAATTG
TGGCACCCTCACCACAACAATTTGGCGGCGAAGTGTTCGAGGAGAGATGG
TGTGCAACGCCTGCGGATTGTACTTCAAGCTGCATGGGGTCAACAGGCCG
CATTCAATGAGACGCGATACCATACACACCAGACGCAGGCGTCCTAAAGA
ATTGGAGCGATCTAAAAAGAAACACAAACAAATGTCATCATGTTCTTCAA
TAGAAACAACGAAGCAAGATTTCTTGACGGCTAGGGAATCTCTAGCCATT
TCGGGCCTTGTTTTAAATAAATTCAAAAAGGAAATTGATGATACCGAGAC
CCCAGCCGCAGCAGCACTTAAAGATATTTTATCAAGGCGTAAGAAGTCAA
ATTCTTTGCCGGCGTTTAATGATACCTGTGAAAGTGCGGATCTATCCGCA
CCGCTTAACCTTGTTTCCAGTGAAAATAATGCAAAGTTAACAGCAAGCTT
TCTAGACCAT

BO34590.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
GATAd-RC 2529 CG5034-PC 1..2526 17..2542 12630 100 Plus
GATAd-RB 2529 CG5034-PB 1..2526 17..2542 12630 100 Plus
GATAd-RA 2529 CG5034-PA 1..2526 17..2542 12630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
GATAd-RC 3467 CG5034-RC 162..2687 17..2542 12630 100 Plus
GATAd-RB 2903 CG5034-RB 342..2867 17..2542 12630 100 Plus
GATAd-RA 2723 CG5034-RA 162..2687 17..2542 12630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10336022..10336883 899..1760 4310 100 Plus
2L 23513712 2L 10334075..10334813 17..755 3695 100 Plus
2L 23513712 2L 10337367..10337596 2041..2270 1150 100 Plus
2L 23513712 2L 10338232..10338405 2369..2542 870 100 Plus
2L 23513712 2L 10337139..10337293 1887..2041 775 100 Plus
2L 23513712 2L 10335779..10335925 753..899 735 100 Plus
2L 23513712 2L 10336944..10337073 1760..1889 650 100 Plus
2L 23513712 2L 10338019..10338116 2271..2368 490 100 Plus
Blast to na_te.dros performed on 2014-11-28 14:57:34 has no hits.

BO34590.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:23:17 Download gff for BO34590.complete
Subject Subject Range Query Range Percent Splice Strand
GATAd-RA 162..2687 17..2544 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:27:51 Download gff for BO34590.complete
Subject Subject Range Query Range Percent Splice Strand
GATAd-RA 162..2687 17..2544 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:27:51 Download gff for BO34590.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10338019..10338116 2271..2368 100 -> Plus
2L 10337141..10337293 1889..2041 100 -> Plus
2L 10337368..10337596 2042..2270 100 -> Plus
2L 10334075..10334812 17..754 100 -> Plus
2L 10335781..10335924 755..898 100 -> Plus
2L 10336022..10336883 899..1760 100 -> Plus
2L 10336945..10337072 1761..1888 100 -> Plus
2L 10338232..10338405 2369..2544 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:23:17 Download gff for BO34590.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10334075..10334812 17..754 100 -> Plus
arm_2L 10335781..10335924 755..898 100 -> Plus
arm_2L 10336022..10336883 899..1760 100 -> Plus
arm_2L 10336945..10337072 1761..1888 100 -> Plus
arm_2L 10337141..10337293 1889..2041 100 -> Plus
arm_2L 10337368..10337596 2042..2270 100 -> Plus
arm_2L 10338019..10338116 2271..2368 100 -> Plus
arm_2L 10338232..10338405 2369..2544 98   Plus

BO34590.pep Sequence

Translation from 16 to 2560

> BO34590.pep
MNNVPHKFRQVCRLCLTLVNECDVAVLQIYDNSSHNNSAPDRISADFRGV
ANRANCFCSALSPNPCSCIVDNPLSANKNERRNQGTPVPVPIPIPVSVPV
PVPSQQIQSQTLHHHQNQTKIHYTPSVPSAADAKSSERERQCQLESDIAE
RSTVFKSQSSSDHEHIEYSGETPSPSASLSQSQTKSEPMREEEEHQHNHN
QQSGREETSVNTTNISGTDNYGKEHGRDDSSSPHLTFQIFNCLSIKALPN
DGLPNVVCGDCRQKLDSFEKFRTMAHNSQIALKEFLNISKNLRPDPNDLE
TKLDAILKASSEAIAAKALTELSTFSKVKYDHSKLDSSIQPGLDRKIEIS
NQEMPAHSLYPSLFKSITMKSDQKSKAMSGSSHSQFDSKLQKDSDIEKYE
NLQQQLETAAVLMDISKKIVISPPCSNPQSPCFSAAVDTSIKSSVIKSKR
PSNQNEIQDGVEIDLSVKKQKNDYSNQRNAAPIHHFCQTPMLDIQSHLRS
EEDFQNYSITINQVGGSDFKSKAPKASTGSLLDSGDSSDSHKLEMDITSS
INDRKTPDSLSSDHATDAATTQLWQALARSAAKSKEDNPASQIFRNMMSQ
PFAFPVPSTVSFTKVPEEPIALLKDLSEAQSSKSKPCRRKQSFPTKTDCI
DVVNENVTDTYTTSEATPDDKKDKRNINLFNAIPGAQKDMSCSNCGTLTT
TIWRRSVRGEMVCNACGLYFKLHGVNRPHSMRRDTIHTRRRRPKELERSK
KKHKQMSSCSSIETTKQDFLTARESLAISGLVLNKFKKEIDDTETPAAAA
LKDILSRRKKSNSLPAFNDTCESADLSAPLNLVSSENNAKLTASFLDH

BO34590.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
GATAd-PC 842 CG5034-PC 1..842 1..842 4356 100 Plus
GATAd-PB 842 CG5034-PB 1..842 1..842 4356 100 Plus
GATAd-PA 842 CG5034-PA 1..842 1..842 4356 100 Plus
pnr-PD 488 CG3978-PD 156..227 674..745 228 56.9 Plus
pnr-PB 488 CG3978-PB 156..227 674..745 228 56.9 Plus