Clone BO34593 Report

Search the DGRC for BO34593

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:345
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG17715-RC
Protein status:BO34593.pep: Imported from assembly
Sequenced Size:733

Clone Sequence Records

BO34593.complete Sequence

733 bp assembled on 2013-10-29

GenBank Submission: KX797304

> BO34593.complete
GAAGTTATCAGTCGACATGCGAAATAAATTTCAATCCGCTATTAGGGGCG
TAACGCGACAATACATTATAAGATCGTGGCCCCGAGGCAGAGAGCTATTG
AGGACGCAACTGATTATCCCGCCATCTTCTACATCTAGCCCATTTACCTG
TAGAAACTACTCAAAGTTTAGCACACATTTGTCTATGGAGCGGGCGTTGG
AGTTGCTATGCAACCTTGATGACGAGGAACGCGGCAACCTGCGCTCCGCT
CTTGGCAGGCTAGATGCCGACAAGGAAAAAAAATTATACGAGATTGAGAC
GGCAGCATCCCCCACGGCAGGTCAATTGTACAGCATTTTCTTTGTAAATG
CAGTGCCGTTTATCGCTTTCGGATTCCTTGACAATTTCATAATGATCATG
GCGGGTGAATACATTGAATATTATTTGGGCCACTTTATAACGCTGTCTAC
AATGGCAGCCGCAGGACTAGGAAACACCATAAGCGATATTTTAGGCATCA
CTATGGCCACCTACGTTGAGAATGGGTGCCAGATATTGGGTCTAAAGCAG
CCCAATTTGACTCCAGCGCAATTTGAATTAAAGTCTAGCAAGCGGTCTTC
AAGTTACGGACGGATTGTCGGGATCACTGTAGGCTGTTTGCTTGGAATGT
GTCCTTTATGGTTTATGGATGAAAAAGCAGATAAGGTGAATGTAAAAGAT
GAAATCCCGAAAAATGCAAGCTTTCTAGACCAT

BO34593.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG17715-RC 702 CG17715-PC 1..699 17..715 3495 100 Plus
CG17715-RF 702 CG17715-PF 1..699 17..715 3495 100 Plus
CG17715-RB 825 CG17715-PB 401..822 294..715 2110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17715-RC 1501 CG17715-RC 293..991 17..715 3495 100 Plus
CG17715-RF 4284 CG17715-RF 352..1050 17..715 3495 100 Plus
CG17715-RE 1804 CG17715-RE 873..1294 294..715 2110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 808244..808520 293..17 1385 100 Minus
2L 23513712 2L 22844571..22844847 17..293 1385 100 Plus
2R 25286936 2R 803458..803663 608..403 1030 100 Minus
2L 23513712 2L 22849428..22849633 403..608 1030 100 Plus
2R 25286936 2R 803291..803402 715..604 545 99.1 Minus
2L 23513712 2L 22849689..22849800 604..715 545 99.1 Plus
2R 25286936 2R 803717..803785 404..336 345 100 Minus
2L 23513712 2L 22849306..22849374 336..404 345 100 Plus
2R 25286936 2R 803836..803877 335..294 210 100 Minus
2L 23513712 2L 22849214..22849255 294..335 210 100 Plus
Blast to na_te.dros performed on 2014-11-28 14:11:37 has no hits.

BO34593.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:45:07 Download gff for BO34593.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RF 352..1050 17..717 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:43:03 Download gff for BO34593.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RF 352..1050 17..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:43:03 Download gff for BO34593.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22844571..22844847 17..293 100 -> Plus
2L 22849214..22849255 294..335 100 -> Plus
2L 22849306..22849373 336..403 100 -> Plus
2L 22849429..22849632 404..607 100 -> Plus
2L 22849693..22849800 608..717 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:45:07 Download gff for BO34593.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22737303..22737579 17..293 100 -> Plus
arm_2L 22741946..22741987 294..335 100 -> Plus
arm_2L 22742038..22742105 336..403 100 -> Plus
arm_2L 22742161..22742364 404..607 100 -> Plus
arm_2L 22742425..22742532 608..717 98   Plus

BO34593.pep Sequence

Translation from 16 to 733

> BO34593.pep
MRNKFQSAIRGVTRQYIIRSWPRGRELLRTQLIIPPSSTSSPFTCRNYSK
FSTHLSMERALELLCNLDDEERGNLRSALGRLDADKEKKLYEIETAASPT
AGQLYSIFFVNAVPFIAFGFLDNFIMIMAGEYIEYYLGHFITLSTMAAAG
LGNTISDILGITMATYVENGCQILGLKQPNLTPAQFELKSSKRSSSYGRI
VGITVGCLLGMCPLWFMDEKADKVNVKDEIPKNASFLDH

BO34593.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17715-PC 233 CG17715-PC 1..233 1..233 1203 100 Plus
CG17715-PF 233 CG17715-PF 1..233 1..233 1203 100 Plus
CG17715-PB 274 CG17715-PB 1..274 1..233 1150 84.7 Plus
CG17715-PD 274 CG17715-PD 1..274 1..233 1150 84.7 Plus
CG17715-PG 269 CG17715-PG 1..267 1..226 1101 83.1 Plus