Clone BO34652 Report

Search the DGRC for BO34652

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:346
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG34112-RB
Protein status:BO34652.pep: Imported from assembly
Sequenced Size:391

Clone Sequence Records

BO34652.complete Sequence

391 bp assembled on 2013-10-29

GenBank Submission: KX796418

> BO34652.complete
GAAGTTATCAGTCGACATGAGCAAAGCCAAGTCAACCGCCCACGAGCCGA
CGATCCACTACCTGGACAGCGTGCTGAGCGATGAGGAGAAGCGGTGCGCC
TATGGCCACCAGTGGCGCAACTTCTCCATCTCCCGATCCGGACGCTTTCG
TTCGAAGAACAAGAAGCGGGATGCGGTCGACGGAAAGTTCTTTGACGGAG
GATCTGGATCAGGATCTCTGCAGGACTTCGAGAAGGTCTCAAATTGCACT
TCGAAAAGCACAATATCCAAGTGCCTCGACCCTGCGACAGGACCGATGAC
GCCTGCAGCTAATCAGACAAGAAGCCAACGTGACCAGGTTGAGAGCTATA
AAAGTGTTTACGAAACGAATTTAGCAAGCTTTCTAGACCAT

BO34652.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG34112-RB 360 CG34112-PB 1..357 17..373 1785 100 Plus
CG34112-RD 291 CG34112-PD 1..221 17..237 1105 100 Plus
CG34112-RC 291 CG34112-PC 1..221 17..237 1105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG34112-RB 970 CG34112-RB 213..570 16..373 1790 100 Plus
CG34112-RD 1139 CG34112-RD 213..434 16..237 1110 100 Plus
CG34112-RC 1094 CG34112-RC 213..434 16..237 1110 100 Plus
CG34112-RD 1139 CG34112-RD 602..739 236..373 690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4393826..4394047 237..16 1110 100 Minus
3R 32079331 3R 4392111..4392251 373..233 705 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:29:55 has no hits.

BO34652.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:35 Download gff for BO34652.complete
Subject Subject Range Query Range Percent Splice Strand
CG34112-RB 214..570 17..375 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:15:19 Download gff for BO34652.complete
Subject Subject Range Query Range Percent Splice Strand
CG34112-RB 214..570 17..375 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:15:19 Download gff for BO34652.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4392109..4392248 236..375 98 <- Minus
3R 4393828..4394046 17..235 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:35 Download gff for BO34652.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 217831..217970 236..375 98 <- Minus
arm_3R 219550..219768 17..235 100   Minus

BO34652.pep Sequence

Translation from 16 to 391

> BO34652.pep
MSKAKSTAHEPTIHYLDSVLSDEEKRCAYGHQWRNFSISRSGRFRSKNKK
RDAVDGKFFDGGSGSGSLQDFEKVSNCTSKSTISKCLDPATGPMTPAANQ
TRSQRDQVESYKSVYETNLASFLDH

BO34652.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG34112-PB 119 CG34112-PB 1..119 1..119 626 100 Plus
CG34112-PD 96 CG34112-PD 1..74 1..74 392 100 Plus
CG34112-PC 96 CG34112-PC 1..74 1..74 392 100 Plus
CG34112-PA 80 CG34112-PA 1..73 1..73 388 100 Plus