BO34702.complete Sequence
1144 bp assembled on 2013-10-29
GenBank Submission: KX795203
> BO34702.complete
GAAGTTATCAGTCGACATGGCTCAAGTTCAGCTCAACGCAGGAAATGGGC
AAGCCCCAAGCAACGGAAATAATGTCGAGGATAATGAACCCTATCAAATA
AGTGACGATGATTTGGATGACCTGGATGATGATTGCTTGCTCGAGGAGGC
AGATACCTCAGGGGCAGGCAATAATGTGGGACGTGGTCCGTACGAGCGTG
CTTGGACCACGGAGGCCACCAGAGCATTGATTCACATACGCGGTCCCATG
GAGGGTAGCTTTACAGAGGGCAGACAAAAACGGACTGCTCTTTGGCTGCA
CTGCACCCGGCAACTACAGCGACTGGGATTTCGCTACTCCGCCGCAAAGG
TGCAGAAGAAGTGGCATAACATCCTCATCACCTACAACAAGAATCTGAAC
AAAAAATACGTATCCGGCTATGTGCACTGGGAGTTCTTCGAGGAGATGTT
CAAGTATCTGCAGGGCAAGAAGGCCGACTTTGATATGCAGTTGCCACAAC
AGACCTCAAATGCGCCACAAGCTCCACATTCTGCTAATGGGCAAAACCCG
AATCCGGGTATTCCCCAGCAACCTTTACAGCTTCAACCTACTCCGGTGAG
CCTAAAGCCGGGAACACCCCAAATGCAGGTGCAACTTCCACCCCAGACTG
CGGCCAAGGACAGCCAGCCGTATATTACACCTGTGGATCAGGTCCTGCTG
CAGGCCCAGATGAATCTGGACAGCAAGTCCAACGATGAGTTCGATGAGGA
TAGCAACAGCATGTCTGAGGTAGTACGTCAACCCAAGATGGAGTACGATG
GCGATCAAGTTGCGGAGGCGGAACGTACAAACGATAGCAGCCAACATCTG
GAAGTTAATGGCAAGCTCTACGATCTGGCACGACCCATGGGCTCGCACCA
AGCTTCTGGCATCCCCGATGACATCTGGTGGAAGGACTACTTTGAAAGAA
AACTGGAAGTGGAGCGGGAGAAGATAGAGCTACAACGGAGTTTGCAGCGC
GAACAGGTGCAGATCCAAAAAATGTCACTGGTGCAGCAGGAGCGGATTGA
GCGCATGAAGATCGATGCCATCAACAGCCTGACGGGCACGCTGCAAAAGT
TGGTGGAGGCCAAGTGCCGCCGGGCCGCAAGCTTTCTAGACCAT
BO34702.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13148-RD | 1113 | CG13148-PD | 1..1110 | 17..1126 | 5400 | 99.1 | Plus |
| CG13148-RC | 1113 | CG13148-PC | 1..1110 | 17..1126 | 5400 | 99.1 | Plus |
| CG13148-RA | 1113 | CG13148-PA | 1..1110 | 17..1126 | 5400 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13148-RD | 1303 | CG13148-RD | 99..1208 | 17..1126 | 5400 | 99.1 | Plus |
| CG13148-RC | 1494 | CG13148-RC | 290..1399 | 17..1126 | 5400 | 99.1 | Plus |
| CG13148-RA | 1603 | CG13148-RA | 399..1508 | 17..1126 | 5400 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12687836..12688691 | 271..1126 | 4190 | 99.3 | Plus |
| 2R | 25286936 | 2R | 12687597..12687780 | 90..273 | 875 | 98.4 | Plus |
| 2R | 25286936 | 2R | 12687007..12687079 | 17..89 | 350 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:10:00 has no hits.
BO34702.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:44:35 Download gff for
BO34702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13148-RA | 399..1508 | 17..1128 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:28 Download gff for
BO34702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13148-RA | 399..1508 | 17..1128 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:42:28 Download gff for
BO34702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12687007..12687079 | 17..89 | 98 | -> | Plus |
| 2R | 12687597..12687780 | 90..273 | 98 | -> | Plus |
| 2R | 12687839..12688691 | 274..1128 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:44:35 Download gff for
BO34702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8574512..8574584 | 17..89 | 98 | -> | Plus |
| arm_2R | 8575102..8575285 | 90..273 | 98 | -> | Plus |
| arm_2R | 8575344..8576196 | 274..1128 | 99 | | Plus |
BO34702.pep Sequence
Translation from 16 to 1144
> BO34702.pep
MAQVQLNAGNGQAPSNGNNVEDNEPYQISDDDLDDLDDDCLLEEADTSGA
GNNVGRGPYERAWTTEATRALIHIRGPMEGSFTEGRQKRTALWLHCTRQL
QRLGFRYSAAKVQKKWHNILITYNKNLNKKYVSGYVHWEFFEEMFKYLQG
KKADFDMQLPQQTSNAPQAPHSANGQNPNPGIPQQPLQLQPTPVSLKPGT
PQMQVQLPPQTAAKDSQPYITPVDQVLLQAQMNLDSKSNDEFDEDSNSMS
EVVRQPKMEYDGDQVAEAERTNDSSQHLEVNGKLYDLARPMGSHQASGIP
DDIWWKDYFERKLEVEREKIELQRSLQREQVQIQKMSLVQQERIERMKID
AINSLTGTLQKLVEAKCRRAASFLDH
BO34702.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13148-PD | 370 | CG13148-PD | 1..370 | 1..370 | 1952 | 100 | Plus |
| CG13148-PC | 370 | CG13148-PC | 1..370 | 1..370 | 1952 | 100 | Plus |
| CG13148-PA | 370 | CG13148-PA | 1..370 | 1..370 | 1952 | 100 | Plus |
| CG13148-PB | 370 | CG13148-PB | 1..370 | 1..370 | 1952 | 100 | Plus |
