Clone BO34706 Report

Search the DGRC for BO34706

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:347
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG15820-RA
Protein status:BO34706.pep: Imported from assembly
Sequenced Size:958

Clone Sequence Records

BO34706.complete Sequence

958 bp assembled on 2013-10-29

GenBank Submission: KX797870

> BO34706.complete
GAAGTTATCAGTCGACATGCATAAACGCCTGCAGTATGAAGAGGTGATGA
TTCCAGCACCTTGGGGTCACATAGCAGGCCGTTGGTATGGCAATCGAGCT
GATAGACCCATTTTGGCAATTCACGGATGGCTGGACAATCTGGGAACCTT
CGATCGGCTGATTCCCCTGCTTCCCGACTACATAGGCGTGCTGTGCATCG
ACCTACCCGGACATGGTAGATCTTCTAGGCTTCCGCCGGGTGTGCCCTAC
AACGTCTACGACTATGTGTTCATCATACCGAGGGTGATGAAGGAGTTCGG
CTGGTCCAAGGTCTCCTTAATGGGTCATTCCCTTGGAGGAGTGATGAGCT
TCATGTACGCAGCCATGGCACCAAGCACAGTCGATATGATTATATCATTG
GATGTACTGCTGCCGCGGAGAATCGAGGATCCCAGCAAGTTGACCAAGGA
CATAGAAGGTTATTTGCTGGAGGAGAGGCGACAGGCGGATGGCACCGAAC
ATGAGCCGCCATCGTTCACCTTAAGTAAACTGCGTGAGACGCTCGCCCGG
AACAGCAACAACTCGGTGCCGCAACACCTGGCCGATCACATGCTCCACCG
CCAGGTGGCCAAATCAAACATGTACCCGGAAAAGGTATTCTTCTCCAGAG
ATGGGCGTGTAAAGTTCTATCACATATTCGACATTGAAAACGGACTTGCT
CTTGAAATGGCGAGGCGCATTGAGAAGAAACCCTATCTGGTAATTAAGGG
ATCCCTTTCGCCATTTGTGGGACCTCGATGCAACGAAACAATGTCCATTC
TGTCCCATGATAACCCCAACTTTGAGTTCTACGAAGTGGAGGGCGGCAAG
CATCATGTCCACCTGCATGCCGCCGAGGAGTGTGCCCGCTATATCGTTCC
CTTCATCCGAAATCACAGACCTCCAAGAAGCAGCAAACTTGCAAGCTTTC
TAGACCAT

BO34706.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15820-RA 927 CG15820-PA 1..924 17..940 4455 98.8 Plus
CG15879-RA 1029 CG15879-PA 37..395 56..414 730 80.2 Plus
CG5704-RB 1008 CG5704-PB 34..344 44..354 535 78.1 Plus
CG15879-RA 1029 CG15879-PA 809..911 819..921 230 81.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG15820-RA 1183 CG15820-RA 191..1114 17..940 4455 98.8 Plus
CG15879-RA 1389 CG15879-RA 176..534 56..414 730 80.2 Plus
CG5704-RB 1289 CG5704-RB 159..469 44..354 535 78.1 Plus
CG15879-RA 1389 CG15879-RA 948..1050 819..921 230 81.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2173064..2173981 940..23 4425 98.8 Minus
3L 28110227 3L 2168405..2168763 414..56 730 80.2 Minus
3L 28110227 3L 2170373..2170683 354..44 535 78.1 Minus
3L 28110227 3L 2172503..2172675 222..50 310 78.6 Minus
3L 28110227 3L 2169806..2169949 924..781 255 78.5 Minus
3L 28110227 3L 2167889..2167991 921..819 230 81.6 Minus
3L 28110227 3L 2171850..2172028 885..707 205 74.3 Minus
Blast to na_te.dros performed on 2014-11-28 14:10:16 has no hits.

BO34706.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:44:41 Download gff for BO34706.complete
Subject Subject Range Query Range Percent Splice Strand
CG15820-RA 191..1114 17..942 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:31 Download gff for BO34706.complete
Subject Subject Range Query Range Percent Splice Strand
CG15820-RA 191..1114 17..942 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:42:31 Download gff for BO34706.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2173062..2173987 17..942 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:44:41 Download gff for BO34706.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2173062..2173987 17..942 98   Minus

BO34706.pep Sequence

Translation from 16 to 958

> BO34706.pep
MHKRLQYEEVMIPAPWGHIAGRWYGNRADRPILAIHGWLDNLGTFDRLIP
LLPDYIGVLCIDLPGHGRSSRLPPGVPYNVYDYVFIIPRVMKEFGWSKVS
LMGHSLGGVMSFMYAAMAPSTVDMIISLDVLLPRRIEDPSKLTKDIEGYL
LEERRQADGTEHEPPSFTLSKLRETLARNSNNSVPQHLADHMLHRQVAKS
NMYPEKVFFSRDGRVKFYHIFDIENGLALEMARRIEKKPYLVIKGSLSPF
VGPRCNETMSILSHDNPNFEFYEVEGGKHHVHLHAAEECARYIVPFIRNH
RPPRSSKLASFLDH

BO34706.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG15820-PA 308 CG15820-PA 1..308 1..308 1653 100 Plus
CG5704-PB 335 CG5704-PB 9..304 7..303 1096 68.4 Plus
CG5704-PA 335 CG5704-PA 9..304 7..303 1096 68.4 Plus
CG15879-PA 342 CG15879-PA 6..305 7..303 1074 65.1 Plus
CG5707-PA 357 CG5707-PA 21..317 9..303 783 48 Plus