BO34709.complete Sequence
1717 bp assembled on 2014-07-17
GenBank Submission: KX797002
> BO34709.complete
GAAGTTATCAGTCGACATGGGGGATGTGGAGTTTCAGAATGTCCAAGAGA
TAAGGGGCACTCCACAGAATGCAATGAGAATGATCCGCTTAGAACTCGAC
GAGGAGGAGAATCGCCGGCAAATGTCGTCCAGTAAATATGGTGGCGTCTG
CTTCCACGTGGCCATAGCCGTCATGCTTTGTGTAATGGTGTTGGTGCTAA
TTTGTTCGGCTCCCCTTGGAGAAAACATGTCCAATCTTACGTCCGAGGAG
CGGCACGCTCGCCTGAGGCAGATTTACATTGAGAAAGAGCGCCGGCAAAG
ACTTGGCAGCAGGATGGGCTTGAGTCCGCTGGAGGAGGAGGCCAATGATC
GGCTCATGGCCATTAGGCAGGTGGATGAGGAGTTTTATAATCTCTGGAGG
AACTACCACTCCCAGCCACCGCCGTTTCTCAAACATCTGAACATCATCGA
TACGAATCTTTATGCGGCACTTAAGAGCATGCCCAAGGGCGGACTCCTTC
ACGTCCACGATTCGGGAATGTTGAGAATGGAAATTCTCATCGATTTGATC
TACCGCGATAACCTGTGGGTCTGCGTTAACTTGGAACAGGACTTCGAGGA
CTTCCGATTCTCCAGATACTTTCCTCACATCCCGCCCGCTGAGGACTACC
AGTGCAATTGGATGCTGATGAGCAACTTCTTCCAGTTGGAGTCTCGGTTA
GAATTCGAGAACAGGTTGAGGAAAACTCTCACTGTCCGGCCGGAGGGGTA
TAAGAGTTCCTCCGAGTTGGCGCGACACTTAAGACGCCACCAACGCATCA
TCCATGGACTGATCACATTCCGCCCGATCTGGAGTGAATTTATCTTCACC
ATGCTGAGCGATTTCTATGCCGACGGGGTGCATTATGTGGAGTTGCGTTC
CTCGCTGCCAAATATGTACGATCTGGATGGAAATAATTTTACGATTTTGG
AAACGGCGGAGGCCTTAGTTTCAGTATCGAATATTTTTAAAAATAGCTTC
AAAGATTTCATCGGAATTAAGCTGATCTATGCTCCTTCTAGGAACTTAAA
TGACAGTCGAATGGATGAGTATTTGGAAAATGCACGTCTGCTTAAGTTGC
ATTTTCCGAATTTCTTTGCTGGATTTGATCTTAACACCTTTGGGGACGAG
TGCAATTTACCACTTTTAGAAAATGTTACTCAACTATTAAGGATTGGCAA
GAATATTGACTTCTATTTCCATGCGGGAGAGTCCCGATGTCCGGATAGTT
CCCGCCCAGATGCGAATCTTTTAGAGGCATTATTGTTGCAAAGTAAACGG
ATCGGTAATGCCGTGAATCTACCCTTTCATCCAGAGATTATGAAGGTCAT
GAAAAGGCTTAGTATAGCCGTGGAGATCTGTCCGCTGTCCAACCATTATC
TGCAATACTTTAACGATTTTCGTCAACATCCGGCGGCGTATTTGATTGCC
GCCGGATTTCCAATTGTAATTGGTTCGGACTATCCGTGTTTCTGGAACTC
CGCCCCTCTGACCGACGACTTTTATGTGGCCTTCGTGGGCGTGATTAGTG
GGTGGGGCGATTTGCGCCTCCTAAAGCAGTTTGCCCTCAATTCGTTTCTG
TTTAGCTCCCTCAGCGAAACGGAGAAGAATATGGCCGTATCCAAGTGGCA
GTGTAGCTGGAACCGATGGGTCAGAAATTTAGTCAATAGTAGTGGATACG
CAAGCTTTCTAGACCAT
BO34709.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:12:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Msi-RA | 1686 | CG32178-PA | 1..1683 | 17..1699 | 8385 | 99.9 | Plus |
| Msi-RC | 1629 | CG32178-PC | 1..1626 | 74..1699 | 8100 | 99.9 | Plus |
| Msi-RB | 1629 | CG32178-PB | 1..1626 | 74..1699 | 8100 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Msi-RA | 1814 | CG32178-RA | 97..1779 | 17..1699 | 8385 | 99.9 | Plus |
| Msi-RB | 1800 | CG32178-RB | 97..1765 | 31..1699 | 8315 | 99.9 | Plus |
| Msi-RC | 1794 | CG32178-RC | 97..1759 | 37..1699 | 8285 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:12:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17755944..17756840 | 913..17 | 4470 | 99.9 | Minus |
| 3L | 28110227 | 3L | 17754971..17755575 | 1699..1095 | 3010 | 99.8 | Minus |
| 3L | 28110227 | 3L | 17755633..17755815 | 1096..914 | 915 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:12:28 has no hits.
BO34709.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-17 10:54:09 Download gff for
BO34709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msi-RA | 97..1779 | 17..1701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:33:40 Download gff for
BO34709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msi-RA | 97..1779 | 17..1701 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:33:40 Download gff for
BO34709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17754969..17755573 | 1097..1701 | 99 | <- | Minus |
| 3L | 17755633..17755815 | 914..1096 | 100 | <- | Minus |
| 3L | 17755944..17756840 | 17..913 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-17 10:54:09 Download gff for
BO34709.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17748069..17748673 | 1097..1701 | 99 | <- | Minus |
| arm_3L | 17748733..17748915 | 914..1096 | 100 | <- | Minus |
| arm_3L | 17749044..17749940 | 17..913 | 99 | | Minus |
BO34709.pep Sequence
Translation from 16 to 1717
> BO34709.pep
MGDVEFQNVQEIRGTPQNAMRMIRLELDEEENRRQMSSSKYGGVCFHVAI
AVMLCVMVLVLICSAPLGENMSNLTSEERHARLRQIYIEKERRQRLGSRM
GLSPLEEEANDRLMAIRQVDEEFYNLWRNYHSQPPPFLKHLNIIDTNLYA
ALKSMPKGGLLHVHDSGMLRMEILIDLIYRDNLWVCVNLEQDFEDFRFSR
YFPHIPPAEDYQCNWMLMSNFFQLESRLEFENRLRKTLTVRPEGYKSSSE
LARHLRRHQRIIHGLITFRPIWSEFIFTMLSDFYADGVHYVELRSSLPNM
YDLDGNNFTILETAEALVSVSNIFKNSFKDFIGIKLIYAPSRNLNDSRMD
EYLENARLLKLHFPNFFAGFDLNTFGDECNLPLLENVTQLLRIGKNIDFY
FHAGESRCPDSSRPDANLLEALLLQSKRIGNAVNLPFHPEIMKVMKRLSI
AVEICPLSNHYLQYFNDFRQHPAAYLIAAGFPIVIGSDYPCFWNSAPLTD
DFYVAFVGVISGWGDLRLLKQFALNSFLFSSLSETEKNMAVSKWQCSWNR
WVRNLVNSSGYASFLDH
BO34709.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Msi-PA | 561 | CG32178-PA | 1..561 | 1..561 | 2966 | 100 | Plus |
| Msi-PC | 542 | CG32178-PC | 1..542 | 20..561 | 2867 | 100 | Plus |
| Msi-PB | 542 | CG32178-PB | 1..542 | 20..561 | 2867 | 100 | Plus |
| Adgf-A-PB | 553 | CG5992-PB | 64..542 | 78..559 | 801 | 35.3 | Plus |
| Adgf-A-PA | 553 | CG5992-PA | 64..542 | 78..559 | 801 | 35.3 | Plus |
