BO34713.complete Sequence
1522 bp assembled on 2013-11-20
GenBank Submission: KX795774
> BO34713.complete
GAAGTTATCAGTCGACATGTACACACCACACCCATTTGGTTTCCTAATCA
TCCTCGTTCCAATGACAAATGCAATGCGGGCGATTGCTGCAATCGCAGCA
GGAGTGGGTTCAGTGGCCGCCACGGTCGCAACCAGCACCACCAGTTCCAT
CAGCAGCAGCACCACCATCATCAACACCAGTAGCGCCACTACCATCGGCG
GGAATCACACCAGTGGGAGCACCGGATTCTCCACGAATTCCACGCTGCTG
GACGCCGATCATCTGCCGCTGCAGCTCACGACCGCCAAGGTGGACCTGGA
CATTGAAATCGACATCCAACTGCTGACAAATGGCTACGATGGCACAACGT
TGACATCGTTCTACAATGAGAGCAGCTGGACAAATGCGTCTGAAATGGAT
ACAATAGTTGGCATCTTCCTATCGGTGCTGATATTCCTTTCGGTGGCCGG
AAACATCCTGGTGTGCCTGGCCATCTACACGGAGCGCAGCCTGCGCCGGA
TCGGCAATCTGTTCCTGGCCTCGTTAGCGATTGCGGATCTCTTCGTGGCC
TCGCTGGTGATGACCTTTGCCGGTGTCAACGATTTGCTGGGATATTGGAT
CTTTGGAGCGCAATTTTGTGATACTTGGGTGGCCTTTGATGTCATGTGCT
CGACGGCGTCAATTCTGAACCTGTGCGCCATCTCGATGGACCGCTACATT
CACATCAAGGATCCGCTCAGATACGGCCGTTGGGTGACACGACGCGTGGC
TGTCATCACCATCGCCGCCATTTGGCTGCTGGCCGCGTTCGTCTCCTTTG
TGCCCATCTCGTTGGGCATCCATCGGCCCGACCAGCCGCTGATTTTCGAG
GACAATGGCAAAAAGTATCCAACATGCGCTCTGGACCTCACGCCCACCTA
CGCCGTCGTGTCCAGCTGTATCAGTTTCTACTTCCCCTGCGTGGTCATGA
TTGGCATCTACTGTCGGCTATACTGCTATGCCCAGAAGCACGTGAAGTCC
ATCAAGGCGGTAACTCGACCAGGTGAGGTGGCCGAGAAGCAGCGGTACAA
GAGCATCCGGCGCCCGAAGAACCAGCCCAAGAAGTTCAAGGTGCGCAATC
TGCACACCCACAGTTCGCCGTATCACGTATCCGACCACAAGGCGGCCGTC
ACGGTGGGCGTGATCATGGGCGTTTTTCTCATCTGCTGGGTGCCCTTCTT
CTGCGTCAACATCACGGCCGCCTTCTGCAAGACCTGCATCGGCGGACAGA
CCTTCAAGATCCTCACCTGGCTGGGCTACTCGAACTCGGCCTTCAATCCG
ATCATCTATTCGATCTTCAACAAGGAGTTTCGCGACGCCTTCAAGCGCAT
CCTGACCATGCGCAATCCGTGGTGTTGTGCCCAGGATGTGGGCAACATTC
ATCCGCGGAACAGCGATCGCTTCATCACGGACTATGCCGCCAAGAATGTG
GTGGTGATGAACTCGGGCCGCTCGAGCGCCGAACTGGAGCAGGTGTCTGC
GATTGCAAGCTTTCTAGACCAT
BO34713.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dop1R1-RC | 1446 | CG9652-PC | 1..1443 | 62..1504 | 7215 | 100 | Plus |
| Dop1R1-RF | 1608 | CG9652-PF | 391..1488 | 407..1504 | 5490 | 100 | Plus |
| Dop1R1-RE | 1608 | CG9652-PE | 391..1488 | 407..1504 | 5490 | 100 | Plus |
| Dop1R1-RF | 1608 | CG9652-PF | 1..350 | 62..411 | 1750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dop1R1-RC | 2616 | CG9652-RC | 488..1976 | 16..1504 | 7445 | 100 | Plus |
| Dop1R1-RF | 2661 | CG9652-RF | 924..2021 | 407..1504 | 5490 | 100 | Plus |
| Dop1R1-RE | 2661 | CG9652-RE | 924..2021 | 407..1504 | 5490 | 100 | Plus |
| Dop1R1-RF | 2661 | CG9652-RF | 488..883 | 16..411 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14177923..14178461 | 1504..966 | 2695 | 100 | Minus |
| 3R | 32079331 | 3R | 14213986..14214323 | 353..16 | 1675 | 99.7 | Minus |
| 3R | 32079331 | 3R | 14180206..14180455 | 967..718 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 14204250..14204431 | 591..410 | 910 | 100 | Minus |
| 3R | 32079331 | 3R | 14191739..14191869 | 720..590 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 14204751..14204813 | 411..349 | 315 | 100 | Minus |
| 3R | 32079331 | 3R | 20693098..20693178 | 1347..1267 | 210 | 84 | Minus |
| 3R | 32079331 | 3R | 18806160..18806247 | 1354..1267 | 200 | 81.8 | Minus |
Blast to na_te.dros performed 2014-11-28 14:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6936 | 96..242 | 194 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6885 | 86..233 | 189 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6683..6838 | 60..213 | 181 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2461 | 59..203 | 173 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6827 | 131..223 | 168 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2424 | 120..223 | 166 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6806 | 137..223 | 156 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2441..2544 | 86..193 | 152 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6945 | 96..267 | 151 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2466 | 131..275 | 147 | 59.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1155 | 129..224 | 138 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2506 | 130..203 | 127 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1586 | 133..180 | 123 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2379 | 151..223 | 122 | 63 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3240..3322 | 99..179 | 122 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2609..2662 | 128..179 | 121 | 72.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1087..1165 | 95..174 | 119 | 64.6 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 974..1011 | 147..184 | 118 | 78.9 | Plus |
BO34713.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-20 12:07:01 Download gff for
BO34713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dop1R1-RC | 489..1976 | 17..1506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:17:51 Download gff for
BO34713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dop1R1-RC | 489..1976 | 17..1506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:17:51 Download gff for
BO34713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14177919..14178460 | 967..1506 | 99 | <- | Minus |
| 3R | 14180207..14180452 | 721..966 | 100 | <- | Minus |
| 3R | 14191739..14191868 | 591..720 | 100 | <- | Minus |
| 3R | 14204251..14204430 | 411..590 | 100 | <- | Minus |
| 3R | 14204752..14204812 | 350..410 | 100 | <- | Minus |
| 3R | 14213990..14214322 | 17..349 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-20 12:07:01 Download gff for
BO34713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10005929..10006174 | 721..966 | 100 | <- | Minus |
| arm_3R | 10017461..10017590 | 591..720 | 100 | <- | Minus |
| arm_3R | 10029973..10030152 | 411..590 | 100 | <- | Minus |
| arm_3R | 10030474..10030534 | 350..410 | 100 | <- | Minus |
| arm_3R | 10003641..10004182 | 967..1506 | 99 | <- | Minus |
| arm_3R | 10039712..10040044 | 17..349 | 100 | | Minus |
BO34713.pep Sequence
Translation from 16 to 1522
> BO34713.pep
MYTPHPFGFLIILVPMTNAMRAIAAIAAGVGSVAATVATSTTSSISSSTT
IINTSSATTIGGNHTSGSTGFSTNSTLLDADHLPLQLTTAKVDLDIEIDI
QLLTNGYDGTTLTSFYNESSWTNASEMDTIVGIFLSVLIFLSVAGNILVC
LAIYTERSLRRIGNLFLASLAIADLFVASLVMTFAGVNDLLGYWIFGAQF
CDTWVAFDVMCSTASILNLCAISMDRYIHIKDPLRYGRWVTRRVAVITIA
AIWLLAAFVSFVPISLGIHRPDQPLIFEDNGKKYPTCALDLTPTYAVVSS
CISFYFPCVVMIGIYCRLYCYAQKHVKSIKAVTRPGEVAEKQRYKSIRRP
KNQPKKFKVRNLHTHSSPYHVSDHKAAVTVGVIMGVFLICWVPFFCVNIT
AAFCKTCIGGQTFKILTWLGYSNSAFNPIIYSIFNKEFRDAFKRILTMRN
PWCCAQDVGNIHPRNSDRFITDYAAKNVVVMNSGRSSAELEQVSAIASFL
DH
BO34713.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dop1R1-PD | 511 | CG9652-PD | 1..511 | 1..496 | 2555 | 97.1 | Plus |
| Dop1R1-PC | 481 | CG9652-PC | 1..481 | 16..496 | 2497 | 100 | Plus |
| Dop1R1-PF | 496 | CG9652-PF | 1..496 | 16..496 | 2471 | 97 | Plus |
| Dop1R1-PE | 560 | CG9652-PE | 1..496 | 16..496 | 2471 | 97 | Plus |
| Dop1R1-PB | 496 | CG9652-PB | 1..496 | 16..496 | 2471 | 97 | Plus |
