BO34714.complete Sequence
787 bp assembled on 2013-10-29
GenBank Submission: KX799691
> BO34714.complete
GAAGTTATCAGTCGACATGTTTCCGCAGATATGGGGTGTGATTTTTTTGT
TCACTCCTACTGTTTTTAGTGAACTCTTTAAGGATCCGGAGCTGCTTGCC
GGATTTTATCAGGGGGACATAAAAGCTCATCCAATTCGTACTCGAAACGG
AATTGTCAATCAGATTTATCACTGGCCCAATCGCACTGTACCATATATGA
TTGAAGATGATGCATTTGCCGACAGTCATTATCGGGAAATTCTTAGAGCC
ATTTCCATCATAGAGGAAAACTCATGCGTTATTTTCAAGCCAGCTACTGA
AATGGATTTTCCCATGGCGCTCGTCATTACGTCAAAAGGTTTGGGCTGCA
ATACCGTTCACTTGGGCTATAGGAATAAGACACAAGTGGTAAATCTGGAG
ATTTACCCACTTGGCGAAGGCTGCTTTCGCATCGGTTCCATTATCCACGA
GCTCCTTCACGTTTTGGGCTTCGAACATCAGCATGTGTCCCAAAATCGGG
ACCAATACGTCAGCATCCAGTGGAAAAATATAAATCCGCAGTACAATATC
AATTTCGTGAACAACGATAATTCTACAGCGTGGCACGACTTTGACGAAGG
CTACGATTATGAAAGTGTTATGCACTATGTGCCAAGGGCCTTTTCCAGGA
ATGGCCAACCCACAATTGTGCCCCTCCGCGAAGGAGCCGAAAATATGGGG
CAACGATTTTATATGAGCGAAAAGGATATTCGCAAGTTGAACAAAATGTA
TAGATGCCCTGATCATGTTGCAAGCTTTCTAGACCAT
BO34714.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Semp1-RA | 756 | CG11864-PA | 1..753 | 17..769 | 3750 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:10:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Semp1-RA | 789 | CG11864-RA | 9..762 | 16..769 | 3755 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:10:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15612521..15613072 | 769..218 | 2745 | 99.8 | Minus |
2L | 23513712 | 2L | 15613125..15613327 | 218..16 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:10:33 has no hits.
BO34714.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:44:47 Download gff for
BO34714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11864-RA | 16..762 | 23..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:37 Download gff for
BO34714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Semp1-RA | 16..762 | 23..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:42:37 Download gff for
BO34714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15612519..15613071 | 219..771 | 99 | <- | Minus |
2L | 15613125..15613320 | 23..218 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:44:47 Download gff for
BO34714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15612519..15613071 | 219..771 | 99 | <- | Minus |
arm_2L | 15613125..15613320 | 23..218 | 100 | | Minus |
BO34714.pep Sequence
Translation from 16 to 787
> BO34714.pep
MFPQIWGVIFLFTPTVFSELFKDPELLAGFYQGDIKAHPIRTRNGIVNQI
YHWPNRTVPYMIEDDAFADSHYREILRAISIIEENSCVIFKPATEMDFPM
ALVITSKGLGCNTVHLGYRNKTQVVNLEIYPLGEGCFRIGSIIHELLHVL
GFEHQHVSQNRDQYVSIQWKNINPQYNINFVNNDNSTAWHDFDEGYDYES
VMHYVPRAFSRNGQPTIVPLREGAENMGQRFYMSEKDIRKLNKMYRCPDH
VASFLDH
BO34714.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Semp1-PA | 251 | CG11864-PA | 1..251 | 1..251 | 1367 | 100 | Plus |
CG15254-PB | 254 | CG15254-PB | 10..254 | 8..251 | 551 | 48.4 | Plus |
CG15254-PA | 254 | CG15254-PA | 10..254 | 8..251 | 551 | 48.4 | Plus |
CG15255-PB | 261 | CG15255-PB | 28..258 | 23..248 | 468 | 43.6 | Plus |
CG15255-PA | 261 | CG15255-PA | 28..258 | 23..248 | 468 | 43.6 | Plus |