BO34717.complete Sequence
1450 bp assembled on 2013-10-29
GenBank Submission: KX795826
> BO34717.complete
GAAGTTATCAGTCGACATGTGGCCTCCAGGGAGCGAGGATAGCTACTCCG
CCAAAATGGACTACGGCAAGAGCGTGGTGAACATCCTGCCCAGCGTAGAG
ATGCTGGTGAACTTTAATGGCGAAATGACGCGGTCTAGCAAACGGTCATG
TCTACTGTACGCGGAGAGAGTGGACTTCAAGGAGCTGCTGCAACTCCGAT
TAACGGAGAAGTCCGATCAACGGCGCATGTACATCACCACAGTGGACAGC
GCCTCCTTTCAGGATCTCAAACAGGATCAGTCGCTGAATGTGTCATTCTC
TGGGTTCATTGACAATGTAGTGCGCATGCTGAAGGACTGCCAGTCGGGTA
AACTGGAGCTGCACCTGACCACACGGGATCAGAACCTTTCATCCGGCAGG
GAGGTCCACGACTATTATCTTCAGTTTGTTGAAATTCGGTCCTTTAAGAA
CCTGGTTCACCTTAGCCTGCCTTGTCGTTCTGCTCCCTTGAACACCGTAC
TCTTCTACATAAACAGCATGCTGGAAGCCTCCCACAAAAAGCAATATATT
CTCGAGCAAAGTATGCAGCAAATGCAGGCTGAAATCAACGCACAACGCGC
GCATGCGGAAAGGTTGACCACGGAAAACACAAATATCAGGGAAGCTTTGG
CCGAAAATACTCGCATCTTAGAGGAAAAGCATGCTGCCGAGGTCCATCAA
TACCAGGAAAAACTGTCCAAAATAAACGAGCAGCGCAGCAATGAGCTGGA
GAGAAATCGTAGAGCGATCTCCGGCTTTCAGGCCCAATTGGACAAGGCTT
CGTTGGAGAAAGCAGAACTAAAGTCGGCCCAAGAGCAGGCCGAGAAACGA
TGTCAAACCCTGTCCGAGGAGTTGTCCTGTTGCAAAGCCAGAGTGTGCAC
TCTAAAAGAGCAAAATGACAAACTGCACGGGGATGTGGCCAACATCAGGA
AGCATGAACGCAAGTTGGAGTACAAAATCGAGGACCTCAAGCAGCACACT
GTCGAGCTGCAGGAACATATTCAAAAGGGAAACAAAGAGAAGGCCAACAT
AGCCGCTGAACTGGAGGCCGAGAAGAAGATCCTGCACACCAAGCGCCAGG
CTTTGGAAATGGCCTCCGAGGAGATCTCCAAGGCCAACCAGATAATCGTT
AAACAAAGCCAGGAGCTGCTCAACCTCAAAAAGACCATTGCCTGGCGCAC
AGAGGTGGCTCTGCAGCAAGAAAAGGCGGTTCAGGCCAAGGAGAGCCTAC
TATCCCTGAGGGAGAATGAGCTGCGCGAGGCTCGAATAACTATTGAAAAA
CTGAGGGAGGAAATCCCCCAGCAACTGCAATCCATGCGTAACTTTGCCCA
GGGACTGGAGCAGAAGTATTCCAAACAAATCCTCATTCTAAAAGAACGGC
TTGCAATACCCACGGGCAAAGAAAACCGGCGAGCAAGCTTTCTAGACCAT
BO34717.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sas-6-RA | 1419 | CG15524-PA | 1..1416 | 17..1432 | 6960 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:10:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sas-6-RA | 1507 | CG15524-RA | 10..1426 | 16..1432 | 6965 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29995599..29996452 | 190..1043 | 4210 | 99.5 | Plus |
| 3R | 32079331 | 3R | 29996508..29996843 | 1041..1376 | 1650 | 99.4 | Plus |
| 3R | 32079331 | 3R | 29995366..29995540 | 16..190 | 860 | 99.4 | Plus |
| 3R | 32079331 | 3R | 29996898..29996953 | 1377..1432 | 265 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:10:46 has no hits.
BO34717.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:44:51 Download gff for
BO34717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sas-6-RA | 11..1426 | 17..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:41 Download gff for
BO34717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sas-6-RA | 11..1426 | 17..1434 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:42:41 Download gff for
BO34717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29996510..29996843 | 1043..1376 | 99 | -> | Plus |
| 3R | 29996898..29996953 | 1377..1434 | 94 | | Plus |
| 3R | 29995367..29995540 | 17..190 | 99 | -> | Plus |
| 3R | 29995600..29996451 | 191..1042 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:44:51 Download gff for
BO34717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25821089..25821262 | 17..190 | 99 | -> | Plus |
| arm_3R | 25821322..25822173 | 191..1042 | 99 | -> | Plus |
| arm_3R | 25822232..25822565 | 1043..1376 | 99 | -> | Plus |
| arm_3R | 25822620..25822675 | 1377..1434 | 94 | | Plus |
BO34717.pep Sequence
Translation from 16 to 1450
> BO34717.pep
MWPPGSEDSYSAKMDYGKSVVNILPSVEMLVNFNGEMTRSSKRSCLLYAE
RVDFKELLQLRLTEKSDQRRMYITTVDSASFQDLKQDQSLNVSFSGFIDN
VVRMLKDCQSGKLELHLTTRDQNLSSGREVHDYYLQFVEIRSFKNLVHLS
LPCRSAPLNTVLFYINSMLEASHKKQYILEQSMQQMQAEINAQRAHAERL
TTENTNIREALAENTRILEEKHAAEVHQYQEKLSKINEQRSNELERNRRA
ISGFQAQLDKASLEKAELKSAQEQAEKRCQTLSEELSCCKARVCTLKEQN
DKLHGDVANIRKHERKLEYKIEDLKQHTVELQEHIQKGNKEKANIAAELE
AEKKILHTKRQALEMASEEISKANQIIVKQSQELLNLKKTIAWRTEVALQ
QEKAVQAKESLLSLRENELREARITIEKLREEIPQQLQSMRNFAQGLEQK
YSKQILILKERLAIPTGKENRRASFLDH
BO34717.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sas-6-PA | 472 | CG15524-PA | 1..472 | 1..472 | 2360 | 100 | Plus |
| mud-PG | 1933 | CG12047-PG | 1365..1681 | 162..455 | 168 | 19.4 | Plus |
| mud-PI | 2113 | CG12047-PI | 1365..1681 | 162..455 | 168 | 19.4 | Plus |
| mud-PJ | 2165 | CG12047-PJ | 1365..1681 | 162..455 | 168 | 19.4 | Plus |
| mud-PF | 2394 | CG12047-PF | 1365..1681 | 162..455 | 168 | 19.4 | Plus |
| mud-PG | 1933 | CG12047-PG | 1237..1507 | 181..454 | 165 | 22.3 | Plus |
| mud-PI | 2113 | CG12047-PI | 1237..1507 | 181..454 | 165 | 22.3 | Plus |
| mud-PJ | 2165 | CG12047-PJ | 1237..1507 | 181..454 | 165 | 22.3 | Plus |
