BO34720.complete Sequence
1102 bp assembled on 2013-10-29
GenBank Submission: KX797500
> BO34720.complete
GAAGTTATCAGTCGACATGATGAAAGCCACAGCGTGGTTTTGTCCGGTGT
TATTAACTTTACTGTGTGCCACAAGGCTCGTCTGCACGGCCCAAAGAGGA
GCAGTTGGAGCAGGAGGAGCTGCAGGAGGATCGGGAGCGGCAGCGGGTGG
AGCGGAGGTCGGCGGAAGCGGCCGCACAAACGGATATCCTCTGGACTACC
CGGATGGAACACGGAACTCACAGGATGACTTTCTGCTGGCCAAGAGGAAC
AAACCGTCGCTGTCCATTGTCAATCCGCTGGATGTGCTGCGCCAGCGGCT
GCTCCTGGAAATCGCACGCAGGCAAATGAAGGAGAACTCCCGCCAGGTCG
AACTGAATCGCGCCATCCTGAAGAACGTGGGCAAGAGGGTCGTGCTGCGA
GGAGGAGGAGGAGGCGGAGGATCGGGAGCAGGAGGATTGGCTCCCAAGGT
GAGCAGGCGCTACCGCCAGCAGTGGCCAGTGGAGCGGGAACTGGAGCGGG
AAAGGCAGAGGGAGAGGGAAAGGGAAAGGGATGCAGTTCGTGAGGAGCAG
CTGGACCGTCAACAGCTGCTGCCGTGGAAGCATTTCCCCAGCCAACTGTG
GAGCTACGGATGGGCCCTGTCGCCGTACAAGGAGTCGTCACAGTTACAGT
TTGCGGACTCCCAGCAATCAGCATCGACTGGACCACAATCCCAGGCACTC
CCAAAGCAGTTGCAGTTGCTCAGCTATGCGAAGAAACCACTGGACGTGGC
CGGAATGAGTCTGGCCAGGCATCGGGTCAGCGGAAATGAAGCCAACGAAA
CGAATCATGAGAACGACGATGGCAATGGGGCCAGTAAAAACCCGGCGAGA
TATGTGGATGACGGCGACAATGAGGGCGAGGATAGCTACAATGACGTGGG
AACAGAAGGTGTGGGACTCGGCCTGGGAATGGGTGTGGGATTGGGTCTGG
AACGGTTCGAGGTGCTGGAGGACAAGCCCAACTGGGCCAATGAGGAACCA
AACGAGTTGGTGGTGGTTAATGCAAATGACCGCGTGCCCTGGTCCTTTCC
CTACCGCTTTCACAAAAGTCAGCATAACGTTAATGCAAGCTTTCTAGACC
AT
BO34720.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dh44-RC | 1071 | CG8348-PC | 1..1068 | 17..1084 | 5310 | 99.8 | Plus |
| Dh44-RA | 1071 | CG8348-PA | 1..1068 | 17..1084 | 5310 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:11:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dh44-RC | 2372 | CG8348-RC | 319..1386 | 17..1084 | 5310 | 99.8 | Plus |
| Dh44-RA | 1412 | CG8348-RA | 32..1099 | 17..1084 | 5310 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:10:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9648979..9649720 | 343..1084 | 3710 | 100 | Plus |
| 3R | 32079331 | 3R | 9643492..9643699 | 17..224 | 1040 | 100 | Plus |
| 3R | 32079331 | 3R | 9647017..9647144 | 222..349 | 610 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:10:59 has no hits.
BO34720.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:44:55 Download gff for
BO34720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dh44-RA | 32..1099 | 17..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:47 Download gff for
BO34720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dh44-RA | 32..1099 | 17..1086 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:42:47 Download gff for
BO34720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9643492..9643698 | 17..223 | 100 | -> | Plus |
| 3R | 9647019..9647141 | 224..346 | 98 | -> | Plus |
| 3R | 9648983..9649720 | 347..1086 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:44:55 Download gff for
BO34720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5469214..5469420 | 17..223 | 100 | -> | Plus |
| arm_3R | 5472741..5472863 | 224..346 | 98 | -> | Plus |
| arm_3R | 5474705..5475442 | 347..1086 | 99 | | Plus |
BO34720.pep Sequence
Translation from 16 to 1102
> BO34720.pep
MMKATAWFCPVLLTLLCATRLVCTAQRGAVGAGGAAGGSGAAAGGAEVGG
SGRTNGYPLDYPDGTRNSQDDFLLAKRNKPSLSIVNPLDVLRQRLLLEIA
RRQMKENSRQVELNRAILKNVGKRVVLRGGGGGGGSGAGGLAPKVSRRYR
QQWPVERELERERQRERERERDAVREEQLDRQQLLPWKHFPSQLWSYGWA
LSPYKESSQLQFADSQQSASTGPQSQALPKQLQLLSYAKKPLDVAGMSLA
RHRVSGNEANETNHENDDGNGASKNPARYVDDGDNEGEDSYNDVGTEGVG
LGLGMGVGLGLERFEVLEDKPNWANEEPNELVVVNANDRVPWSFPYRFHK
SQHNVNASFLDH
BO34720.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dh44-PC | 356 | CG8348-PC | 1..356 | 1..356 | 1872 | 100 | Plus |
| Dh44-PA | 356 | CG8348-PA | 1..356 | 1..356 | 1872 | 100 | Plus |
